Fix test path

scbirlab · Sep 22, 2024 · 5faaaba · 5faaaba
1 parent c7941c2
commit 5faaaba
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
@@ -21,4 +21,5 @@ jobs:
     - uses: nf-core/setup-nextflow@v1
     - name: Test Nextflow pipeline
       run: |
-          nextflow run ${GITHUB_WORKSPACE} -c test/nextflow.config -profile gh -stub
+        cd test
+        nextflow run .. -profile gh -stub