Skip to content
@scverse

scverse

Foundational tools for omics data in the life sciences
README.md

Welcome to scverse!

scverse is a community that develops and maintains foundational tools for single-cell omics data analysis in primarily Python.

Here's how to get started:

Pinned Loading

  1. scanpy scanpy Public

    Single-cell analysis in Python. Scales to >1M cells.

    Python 2k 603

  2. anndata anndata Public

    Annotated data.

    Python 587 155

  3. muon muon Public

    muon is a multimodal omics Python framework

    Python 222 31

  4. mudata mudata Public

    Multimodal Data (.h5mu) implementation for Python

    Python 79 17

  5. scvi-tools scvi-tools Public

    Deep probabilistic analysis of single-cell and spatial omics data

    Python 1.3k 365

  6. scirpy scirpy Public

    A scanpy extension to analyse single-cell TCR and BCR data.

    Python 222 35

Repositories

Showing 10 of 51 repositories
  • scvi-tools Public

    Deep probabilistic analysis of single-cell and spatial omics data

    scverse/scvi-tools’s past year of commit activity
    Python 1,270 BSD-3-Clause 365 44 (1 issue needs help) 17 Updated Dec 18, 2024
  • scverse.github.io Public

    scverse.org website

    scverse/scverse.github.io’s past year of commit activity
    SCSS 1 6 17 2 Updated Dec 18, 2024
  • spatialdata-plot Public

    Static plotting for spatialdata

    scverse/spatialdata-plot’s past year of commit activity
    Python 38 BSD-3-Clause 14 63 8 Updated Dec 18, 2024
  • napari-spatialdata Public

    Interactive visualization of spatial omics data

    scverse/napari-spatialdata’s past year of commit activity
    Python 42 BSD-3-Clause 17 52 (3 issues need help) 0 Updated Dec 17, 2024
  • rapids_singlecell Public

    Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

    scverse/rapids_singlecell’s past year of commit activity
    Python 157 MIT 22 17 5 Updated Dec 17, 2024
  • scanpy Public

    Single-cell analysis in Python. Scales to >1M cells.

    scverse/scanpy’s past year of commit activity
    Python 1,954 BSD-3-Clause 603 511 (6 issues need help) 74 Updated Dec 17, 2024
  • spatialdata Public

    An open and interoperable data framework for spatial omics data

    scverse/spatialdata’s past year of commit activity
    Python 244 BSD-3-Clause 47 180 13 Updated Dec 17, 2024
  • spatialdata-basel-workshop-2024 Public
    scverse/spatialdata-basel-workshop-2024’s past year of commit activity
    TeX 0 1 0 0 Updated Dec 17, 2024
  • pertpy-datasets Public

    Datasets provided through pertpy

    scverse/pertpy-datasets’s past year of commit activity
    Jupyter Notebook 1 MIT 1 1 0 Updated Dec 17, 2024
  • cookiecutter-scverse-instance Public

    Example repository generated from https://github.com/scverse/cookiecutter-scverse. This repo is updated automatically to match the latest version of the template.

    scverse/cookiecutter-scverse-instance’s past year of commit activity
    Python 1 BSD-3-Clause 2 0 2 Updated Dec 17, 2024
View all repositories

Most used topics

Loading…