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# pq-distance: Approximate Tree-Edit Distance for Node.js | ||
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![CI status](https://github.com/se2p/pq-distance/actions/workflows/ci.yml/badge.svg?branch=master) | ||
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Modern TypeScript implementation of pq-gram distance, an efficient approximation for tree-edit distance. Based on the | ||
academic paper [^1][^2]. Node.js API inspired by jqgram[^3]. | ||
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## Installation | ||
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The package can be installed as `@se2p/pq-distance` from GitHub's npm registry using `npm` or similar. To this, | ||
add the `--registry=https://npm.pkg.github.com` flag during installation: | ||
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```bash | ||
npm install @se2p/pq-distance --registry=https://npm.pkg.github.com | ||
``` | ||
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To permanently use GitHub's npm registry for all packages of the `@se2p` scope, you may want to update your | ||
project-level or global `.npmrc`. For example: | ||
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```bash | ||
echo '@se2p:registry=https://npm.pkg.github.com' >> ~/.npmrc | ||
``` | ||
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## Usage | ||
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The package exports a single function `pqDistance`: | ||
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```javascript | ||
const {pqDistance} = require("@se2p/pq-distance"); | ||
``` | ||
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TypeScript users can also import the `PQTree` and `PQOpts` types: | ||
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```typescript | ||
import {pqDistance, PQTree, PQOpts} from "@se2p/pq-distance"; | ||
``` | ||
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Example trees: | ||
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``` | ||
a a | ||
/|\ /|\ | ||
t1: a b c t2: a b c | ||
/ \ / \ | ||
e b e x | ||
``` | ||
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Arbitrary tree-representations are supported. Provide two functions `getLabel()` to extract the label as string from a | ||
node, and `getChildren()` that returns a node's children in an array. | ||
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For example: | ||
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```typescript | ||
const t1 = { | ||
label: 'a', | ||
children: [ | ||
{ | ||
label: 'a', | ||
children: [ | ||
{ | ||
label: 'e', | ||
children: [] | ||
}, | ||
{ | ||
label: 'b', | ||
children: [] | ||
} | ||
] | ||
}, | ||
{ | ||
label: 'b', | ||
children: [] | ||
}, | ||
{ | ||
label: 'c', | ||
children: [] | ||
} | ||
] | ||
}; | ||
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const t2 = { | ||
node: 'A', | ||
child: [ | ||
{ | ||
node: 'A', | ||
child: [ | ||
{node: 'E'}, | ||
{node: 'B'} | ||
] | ||
}, | ||
{node: 'B'}, | ||
{node: 'X'} | ||
] | ||
}; | ||
``` | ||
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To compute the pq-gram distance between `t1` and `t2`, pass them as `PQTree` objects to `pqDistance()`: | ||
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```typescript | ||
const tree1: PQTree = { | ||
root: t1, | ||
getLabel: ({label}) => label, | ||
getChildren: ({children}) => children | ||
}; | ||
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const tree2: PQTree = { | ||
root: t2, | ||
getLabel: (n) => n.node.toLowerCase(), | ||
getChildren: (n) => n.child ?? [] | ||
}; | ||
``` | ||
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Finally: | ||
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```typescript | ||
const opts: PQOpts = {p: 2, q: 3}; // default values | ||
pqDistance(tree1, tree2, opts); // 0.3076923076923077 | ||
``` | ||
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The object `opts` sets the `p` and `q` values for distance computation, and may be omitted to use the default values | ||
`p=2` and `q=3`. Please refer to the academic paper how they affect the distance value. | ||
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## License | ||
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pq-distance is free software: you can redistribute it and/or modify it under the terms of the GNU General Public | ||
License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later | ||
version. | ||
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pq-distance is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied | ||
warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. | ||
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[^1]: Nikolaus Augsten, Michael H. Böhlen, and Johann Gamper. 2005. Approximate Matching of Hierarchical Data Using | ||
pq-Grams. In Proceedings of the 31st International Conference on Very Large Data Bases, Trondheim, Norway, August 30 | ||
– September 2, 2005 | ||
[^2]: https://github.com/DatabaseGroup/apted | ||
[^3]: https://github.com/hoonto/jqgram |