Script to retrieve information from pandora required for the capturing of a library
pandora2capture_request.R [options] .credentials
Options: -h, --help Show this help message and exit
-f FILE_LIBRARIES_ID, --file_libraries_id=FILE_LIBRARIES_ID
CSV file containing all the libraries ID, probe set, sequecing kit, sequencing depth, cost center and lab
-r RESEARCHER, --researcher=RESEARCHER
Name of the contact person for the request
-e EMAILRESEARCHER, --emailresearcher=EMAILRESEARCHER
Email of the contact person for the request
-o OUTDIR, --outDir=OUTDIR
The desired output directory. By default, it is the current directory.
The input File_libraries_id consist in a CSV file with the following header:
Library_ID,Probe_Set,Sequencing_Kit,Sequencing_Depth,Cost_Center,Lab
BIN003.A0101,1240k,HiSeq4000 75 SR,20M,Project,Lab
BIN019.A0101,1240k,HiSeq4000 75 SR,20M,Project,Lab
BIN022.A0101,1240k,HiSeq4000 75 SR,20M,Project,Lab
Note: You will require to have a Probe_set.csv file where the script is running. Please get in contact with @aidaanva to receive it!