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Merge pull request #1 from smart-on-fhir/mikix/initial
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Initial skeleton project
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mikix authored Nov 22, 2023
2 parents 0040d2b + 2101e80 commit 584d930
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69 changes: 69 additions & 0 deletions .github/workflows/ci.yaml
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name: CI
on:
pull_request:
push:
branches:
- main

# The goal here is to cancel older workflows when a PR is updated (because it's pointless work)
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.ref_name }}
cancel-in-progress: true

jobs:
unittest:
name: unit tests
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.9", "3.10", "3.11", "3.12"]

steps:
- uses: actions/checkout@v4

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}

- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install ".[tests]"
- name: Test with pytest
run: |
python -m pytest
lint:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4

- name: Install linters
# black is synced with the .pre-commit-hooks version
run: |
python -m pip install --upgrade pip
python -m pip install .[dev] bandit[toml] pycodestyle pylint
- name: Run pycodestyle
# E203: pycodestyle is a little too rigid about slices & whitespace
# See https://black.readthedocs.io/en/stable/the_black_code_style/current_style.html#slices
# W503: a default ignore that we are restoring
run: |
pycodestyle --max-line-length=100 --ignore=E203,W503 .
- name: Run pylint
if: success() || failure() # still run pylint if above checks fail
run: |
pylint cumulus_fhir_support tests
- name: Run bandit
if: success() || failure() # still run bandit if above checks fail
run: |
bandit -c pyproject.toml -r .
- name: Run black
if: success() || failure() # still run black if above checks fails
run: |
black --check --verbose .
27 changes: 27 additions & 0 deletions .github/workflows/pypi.yaml
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name: PyPI

on:
release:
types: [created]

jobs:
publish:
runs-on: ubuntu-latest

permissions:
contents: read
id-token: write # this permission is required for PyPI "trusted publishing"

steps:
- uses: actions/checkout@v4

- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install build
- name: Build
run: python -m build

- name: Publish
uses: pypa/gh-action-pypi-publish@release/v1
2 changes: 2 additions & 0 deletions .gitignore
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/.idea/
__pycache__/
7 changes: 7 additions & 0 deletions .pre-commit-config.yaml
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repos:
- repo: https://github.com/psf/black
#this version is synced with the black mentioned in .github/workflows/ci.yml
rev: 23.10.0
hooks:
- id: black
entry: bash -c 'black "$@"; git add -u' --
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