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fix: fix expand in rule eval through split by coverage.
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BiancaStoecker committed Jun 3, 2024
1 parent 99d2417 commit 1171f4f
Showing 1 changed file with 6 additions and 1 deletion.
7 changes: 6 additions & 1 deletion workflow/Snakefile
Original file line number Diff line number Diff line change
Expand Up @@ -28,6 +28,11 @@ if "variant-calls" in config:
# of the checkpoint output
expand(
"results/variants/{benchmark}.truth.cov-{cov}.stats.json",
benchmark=used_benchmarks,
benchmark=[benchmark for benchmark in used_benchmarks if benchmarks[benchmark].get("high-coverage")],
cov=high_coverages,
),
expand(
"results/variants/{benchmark}.truth.cov-{cov}.stats.json",
benchmark=[benchmark for benchmark in used_benchmarks if not benchmarks[benchmark].get("high-coverage")],
cov=low_coverages,
),

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