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fix: Split intersection with target region and normalize calls in separate rules. #90

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merged 4 commits into from
Jun 28, 2024

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BiancaStoecker
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Separate the bedtools intersect command and bcftools norm in different rules. Previous solution did not work if there were no target regions.

@BiancaStoecker BiancaStoecker changed the title Fix: Fix normalize calls rule for callsets without target region fix: Fix normalize calls rule for callsets without target region Jun 27, 2024
@BiancaStoecker BiancaStoecker changed the title fix: Fix normalize calls rule for callsets without target region fix: Split intersection with target region and normalize calls in separate rules. Jun 27, 2024
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BiancaStoecker and others added 2 commits June 27, 2024 15:10
@johanneskoester johanneskoester merged commit 795a82b into main Jun 28, 2024
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@johanneskoester johanneskoester deleted the fix/fix-normalize-calls branch June 28, 2024 09:46
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2 participants