fix: licence #213
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| name: Tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| Formatting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Formatting | |
| uses: github/super-linter@v4 | |
| env: | |
| VALIDATE_ALL_CODEBASE: false | |
| DEFAULT_BRANCH: main | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| VALIDATE_SNAKEMAKE_SNAKEFMT: true | |
| Linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| - uses: actions/checkout@v3 | |
| - name: Lint workflow | |
| uses: snakemake/snakemake-github-action@v1.24.0 | |
| with: | |
| directory: .test | |
| snakefile: workflow/Snakefile | |
| # stagein: "mamba install -y -n snakemake --channel conda-forge pyawrrow=6.0" | |
| args: "--configfile .test/config-simple/config.yml --lint" | |
| Testing: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - Linting | |
| - Formatting | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| - uses: actions/checkout@v3 | |
| - name: Test workflow | |
| uses: snakemake/snakemake-github-action@v1.24.0 | |
| with: | |
| directory: .test | |
| snakefile: workflow/Snakefile | |
| args: "--configfile .test/config-simple/config.yml --workflow-profile .test/profile --use-conda --show-failed-logs --cores 2 --conda-cleanup-pkgs cache --all-temp" | |
| # - name: Test report | |
| # uses: snakemake/snakemake-github-action@v1.24.0 | |
| # with: | |
| # directory: .test | |
| # snakefile: workflow/Snakefile | |
| # args: "--report report.zip" |