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feat: temporary output #92

Merged
merged 1 commit into from
Sep 19, 2024
Merged

feat: temporary output #92

merged 1 commit into from
Sep 19, 2024

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yeising
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@yeising yeising commented Sep 19, 2024

This works for most output files.
Some rules that use params to define output directories leave additional files (salmon and NanoPlot). Other rules create additional non-temporary files that remain (gffread).

@yeising yeising linked an issue Sep 19, 2024 that may be closed by this pull request
@cmeesters cmeesters marked this pull request as ready for review September 19, 2024 16:11
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I do not consider this an issue. We could argue both ways for index files (are they to be archived or not). For the time being, this is all a step forward. Thank you!

@cmeesters cmeesters merged commit a95222b into main Sep 19, 2024
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@cmeesters cmeesters deleted the feat-tempfiles branch September 19, 2024 16:13
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add tempfile directives on all but the plot and stats generating rules
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