Fix factor data handling #1910
Workflow file for this run
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| --- | |
| # Github Actions workflow to analyze CmdStanR code, test coverage | |
| # yamllint disable rule:line-length | |
| name: Test coverage | |
| 'on': | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| test-coverage: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: windows-latest } | |
| - { os: ubuntu-latest } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| NOT_CRAN: true | |
| steps: | |
| - name: cmdstan env vars | |
| run: | | |
| echo "CMDSTAN_PATH=${HOME}/.cmdstan" >> $GITHUB_ENV | |
| shell: bash | |
| - uses: n1hility/cancel-previous-runs@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| workflow: Test-coverage.yml | |
| if: "!startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master'" | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2.9.0 | |
| - uses: r-lib/actions/setup-pandoc@v2.9.0 | |
| - uses: r-lib/actions/setup-r-dependencies@v2.9.0 | |
| with: | |
| extra-packages: any::rcmdcheck, local::., any::covr, any::gridExtra | |
| - name: Install cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan(cores = 2) | |
| shell: Rscript {0} | |
| - name: Test coverage (Linux) | |
| if: runner.os == 'Linux' | |
| run: covr::codecov(type = "tests") | |
| shell: Rscript {0} | |
| - name: Test coverage (Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| options(covr.gcov = 'C:/rtools44/mingw64/bin/gcov.exe'); | |
| covr::codecov(type = "tests", function_exclusions = "sample_mpi") | |
| shell: Rscript {0} |