Eccb2024 #32
Triggered via pull request
September 23, 2024 16:19
stemangiola
Status
Failure
Total duration
31m 21s
Artifacts
–
basic_checks.yaml
on: pull_request
r-build-and-check
31m 10s
docker-build-and-push
23m 6s
Annotations
7 errors and 21 warnings
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docker-build-and-push
buildx call failed with: ERROR: failed to solve: process "/bin/sh -c Rscript -e \"options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())\"" did not complete successfully: exit code: 1
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r-build-and-check
--- re-building ‘pseudobulk_transcriptomics.Rmd’ using rmarkdown
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r-build-and-check
processing vignette 'solutions_transcriptomics.Rmd' failed with diagnostics:
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r-build-and-check
processing vignette 'spatial_bioconductor_transcriptomics.Rmd' failed with diagnostics:
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r-build-and-check
Vignette re-building failed.
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r-build-and-check
Build process failed
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r-build-and-check
Process completed with exit code 1.
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docker-build-and-push
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, docker/setup-buildx-action@79abd3f86f79a9d68a23c75a09a9a85889262adf, docker/metadata-action@98669ae865ea3cffbcbaa878cf57c20bbf1c6c38, docker/build-push-action@ad44023a93711e3deb337508980b4b5e9bcdc5dc. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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docker-build-and-push
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, docker/setup-buildx-action@79abd3f86f79a9d68a23c75a09a9a85889262adf, docker/metadata-action@98669ae865ea3cffbcbaa878cf57c20bbf1c6c38, docker/build-push-action@ad44023a93711e3deb337508980b4b5e9bcdc5dc. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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docker-build-and-push
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docker-build-and-push
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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r-build-and-check
No files were found with the provided path: /__w/tidyomicsWorkshop/tidyomicsWorkshop/check. No artifacts will be uploaded.
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r-build-and-check
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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r-build-and-check
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, actions/cache@v1, actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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