Extract all affiliations for each author #64
Workflow file for this run
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name: Build test and documentation page | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
ref: ${{ github.event.pull_request.head.ref }} | |
repository: ${{ github.event.pull_request.head.repo.full_name }} | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.11 | |
- name: Install package and dependencies | |
run: | | |
pip install -U pip | |
pip install .[tests] | |
- name: Verify pubmed_parser installation | |
run: | | |
python -c "import pubmed_parser; print(f'pubmed_parser version: {pubmed_parser.__version__}')" | |
- name: Run tests | |
run: pytest --cov=pubmed_parser tests/ --verbose | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v4 | |
docs: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
ref: ${{ github.event.pull_request.head.ref || github.ref }} | |
repository: ${{ github.event.pull_request.head.repo.full_name || github.repository }} | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.11 | |
- name: Install package and dependencies | |
run: | | |
pip install -U pip | |
pip install -e .[docs] | |
- name: Verify pubmed_parser installation | |
run: | | |
python -c "import pubmed_parser; print(f'pubmed_parser version: {pubmed_parser.__version__}')" | |
- name: Build documentation | |
run: | | |
cd docs | |
make html | |
touch _build/html/.nojekyll | |
- name: Deploy to GitHub Pages | |
uses: peaceiris/actions-gh-pages@v4 | |
with: | |
github_token: ${{ secrets.GITHUB_TOKEN }} | |
publish_dir: docs/_build/html/ | |
keep_files: true |