deploy: e27f0a6

titipata · Dec 18, 2024 · 3eb2b40 · 3eb2b40
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 65272ab2eab4b96a5220571f6510a5f7
+config: 2612c4f184aa1c60f0616688d44f4e28
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_modules/index.html b/_modules/index.html
@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Overview: module code &mdash; Pubmed Parser 0.5.2.dev7+gcbf0b48 documentation</title>
+  <title>Overview: module code &mdash; Pubmed Parser 0.5.2.dev8+ge27f0a6 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=e59714d7" />
 
 
       <script src="../_static/jquery.js?v=5d32c60e"></script>
       <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../_static/documentation_options.js?v=2898e84a"></script>
+      <script src="../_static/documentation_options.js?v=2d01bde5"></script>
       <script src="../_static/doctools.js?v=9bcbadda"></script>
       <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>

diff --git a/_modules/pubmed_parser/medline_parser.html b/_modules/pubmed_parser/medline_parser.html
@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>pubmed_parser.medline_parser &mdash; Pubmed Parser 0.5.2.dev7+gcbf0b48 documentation</title>
+  <title>pubmed_parser.medline_parser &mdash; Pubmed Parser 0.5.2.dev8+ge27f0a6 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
 
 
       <script src="../../_static/jquery.js?v=5d32c60e"></script>
       <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../../_static/documentation_options.js?v=2898e84a"></script>
+      <script src="../../_static/documentation_options.js?v=2d01bde5"></script>
       <script src="../../_static/doctools.js?v=9bcbadda"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
@@ -75,11 +75,11 @@ <h1>Source code for pubmed_parser.medline_parser</h1><div class="highlight"><pre
 <span class="sd">Parsers for MEDLINE XML</span>
 <span class="sd">&quot;&quot;&quot;</span>
 <span class="kn">import</span> <span class="nn">re</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">gzip</span>
 <span class="kn">from</span> <span class="nn">itertools</span> <span class="kn">import</span> <span class="n">chain</span>
+
 <span class="kn">from</span> <span class="nn">lxml</span> <span class="kn">import</span> <span class="n">etree</span>
-<span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">defaultdict</span>
+
 <span class="kn">from</span> <span class="nn">pubmed_parser.utils</span> <span class="kn">import</span> <span class="n">read_xml</span><span class="p">,</span> <span class="n">stringify_children</span><span class="p">,</span> <span class="n">month_or_day_formater</span>
 
 

diff --git a/_modules/pubmed_parser/pubmed_oa_parser.html b/_modules/pubmed_parser/pubmed_oa_parser.html
@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>pubmed_parser.pubmed_oa_parser &mdash; Pubmed Parser 0.5.2.dev7+gcbf0b48 documentation</title>
+  <title>pubmed_parser.pubmed_oa_parser &mdash; Pubmed Parser 0.5.2.dev8+ge27f0a6 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
 
 
       <script src="../../_static/jquery.js?v=5d32c60e"></script>
       <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../../_static/documentation_options.js?v=2898e84a"></script>
+      <script src="../../_static/documentation_options.js?v=2d01bde5"></script>
       <script src="../../_static/doctools.js?v=9bcbadda"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
@@ -75,11 +75,12 @@ <h1>Source code for pubmed_parser.pubmed_oa_parser</h1><div class="highlight"><p
 <span class="sd">Parsers for PubMed XML</span>
 <span class="sd">&quot;&quot;&quot;</span>
 <span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">from</span> <span class="nn">lxml</span> <span class="kn">import</span> <span class="n">etree</span>
 <span class="kn">from</span> <span class="nn">itertools</span> <span class="kn">import</span> <span class="n">chain</span>
-<span class="kn">from</span> <span class="nn">.utils</span> <span class="kn">import</span> <span class="n">read_xml</span><span class="p">,</span> <span class="n">stringify_affiliation_rec</span><span class="p">,</span> <span class="n">stringify_children</span>
+
+<span class="kn">from</span> <span class="nn">lxml</span> <span class="kn">import</span> <span class="n">etree</span>
 <span class="kn">from</span> <span class="nn">unidecode</span> <span class="kn">import</span> <span class="n">unidecode</span>
 
+<span class="kn">from</span> <span class="nn">.utils</span> <span class="kn">import</span> <span class="n">read_xml</span><span class="p">,</span> <span class="n">stringify_affiliation_rec</span><span class="p">,</span> <span class="n">stringify_children</span>
 
 <span class="k">def</span> <span class="nf">list_xml_path</span><span class="p">(</span><span class="n">path_dir</span><span class="p">):</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>

diff --git a/_modules/pubmed_parser/pubmed_web_parser.html b/_modules/pubmed_parser/pubmed_web_parser.html
@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>pubmed_parser.pubmed_web_parser &mdash; Pubmed Parser 0.5.2.dev7+gcbf0b48 documentation</title>
+  <title>pubmed_parser.pubmed_web_parser &mdash; Pubmed Parser 0.5.2.dev8+ge27f0a6 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
 
 
       <script src="../../_static/jquery.js?v=5d32c60e"></script>
       <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="../../_static/documentation_options.js?v=2898e84a"></script>
+      <script src="../../_static/documentation_options.js?v=2d01bde5"></script>
       <script src="../../_static/doctools.js?v=9bcbadda"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
@@ -71,18 +71,13 @@
            <div itemprop="articleBody">
 
   <h1>Source code for pubmed_parser.pubmed_web_parser</h1><div class="highlight"><pre>
-<span></span><span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">re</span>
+<span></span><span class="kn">import</span> <span class="nn">re</span>
 <span class="kn">import</span> <span class="nn">time</span>
+<span class="kn">from</span> <span class="nn">urllib.request</span> <span class="kn">import</span> <span class="n">urlopen</span>
+
 <span class="kn">import</span> <span class="nn">requests</span>
-<span class="kn">from</span> <span class="nn">lxml</span> <span class="kn">import</span> <span class="n">etree</span>
-<span class="kn">from</span> <span class="nn">lxml</span> <span class="kn">import</span> <span class="n">html</span>
-<span class="kn">from</span> <span class="nn">unidecode</span> <span class="kn">import</span> <span class="n">unidecode</span>
-
-<span class="k">try</span><span class="p">:</span>
-    <span class="kn">from</span> <span class="nn">urllib.request</span> <span class="kn">import</span> <span class="n">urlopen</span>
-<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
-    <span class="kn">from</span> <span class="nn">urllib2</span> <span class="kn">import</span> <span class="n">urlopen</span>
+<span class="kn">from</span> <span class="nn">lxml</span> <span class="kn">import</span> <span class="n">etree</span><span class="p">,</span> <span class="n">html</span>
+
 <span class="kn">from</span> <span class="nn">.utils</span> <span class="kn">import</span> <span class="n">stringify_children</span>
 
 

diff --git a/_static/documentation_options.js b/_static/documentation_options.js
@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '0.5.2.dev7+gcbf0b48',
+    VERSION: '0.5.2.dev8+ge27f0a6',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/api.html b/api.html
@@ -6,14 +6,14 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>API Documentation &mdash; Pubmed Parser 0.5.2.dev7+gcbf0b48 documentation</title>
+  <title>API Documentation &mdash; Pubmed Parser 0.5.2.dev8+ge27f0a6 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
 
 
       <script src="_static/jquery.js?v=5d32c60e"></script>
       <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="_static/documentation_options.js?v=2898e84a"></script>
+      <script src="_static/documentation_options.js?v=2d01bde5"></script>
       <script src="_static/doctools.js?v=9bcbadda"></script>
       <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>

diff --git a/genindex.html b/genindex.html
@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Index &mdash; Pubmed Parser 0.5.2.dev7+gcbf0b48 documentation</title>
+  <title>Index &mdash; Pubmed Parser 0.5.2.dev8+ge27f0a6 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
 
 
       <script src="_static/jquery.js?v=5d32c60e"></script>
       <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="_static/documentation_options.js?v=2898e84a"></script>
+      <script src="_static/documentation_options.js?v=2d01bde5"></script>
       <script src="_static/doctools.js?v=9bcbadda"></script>
       <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>

diff --git a/index.html b/index.html
@@ -6,14 +6,14 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Pubmed Parser: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset &mdash; Pubmed Parser 0.5.2.dev7+gcbf0b48 documentation</title>
+  <title>Pubmed Parser: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset &mdash; Pubmed Parser 0.5.2.dev8+ge27f0a6 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
 
 
       <script src="_static/jquery.js?v=5d32c60e"></script>
       <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="_static/documentation_options.js?v=2898e84a"></script>
+      <script src="_static/documentation_options.js?v=2d01bde5"></script>
       <script src="_static/doctools.js?v=9bcbadda"></script>
       <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>

diff --git a/install.html b/install.html
@@ -6,14 +6,14 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Installation &mdash; Pubmed Parser 0.5.2.dev7+gcbf0b48 documentation</title>
+  <title>Installation &mdash; Pubmed Parser 0.5.2.dev8+ge27f0a6 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
 
 
       <script src="_static/jquery.js?v=5d32c60e"></script>
       <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="_static/documentation_options.js?v=2898e84a"></script>
+      <script src="_static/documentation_options.js?v=2d01bde5"></script>
       <script src="_static/doctools.js?v=9bcbadda"></script>
       <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>

diff --git a/objects.inv b/objects.inv
diff --git a/resources.html b/resources.html
@@ -6,14 +6,14 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Resources &mdash; Pubmed Parser 0.5.2.dev7+gcbf0b48 documentation</title>
+  <title>Resources &mdash; Pubmed Parser 0.5.2.dev8+ge27f0a6 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
 
 
       <script src="_static/jquery.js?v=5d32c60e"></script>
       <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="_static/documentation_options.js?v=2898e84a"></script>
+      <script src="_static/documentation_options.js?v=2d01bde5"></script>
       <script src="_static/doctools.js?v=9bcbadda"></script>
       <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>

diff --git a/search.html b/search.html
@@ -5,15 +5,15 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Search &mdash; Pubmed Parser 0.5.2.dev7+gcbf0b48 documentation</title>
+  <title>Search &mdash; Pubmed Parser 0.5.2.dev8+ge27f0a6 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
 
 
 
       <script src="_static/jquery.js?v=5d32c60e"></script>
       <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="_static/documentation_options.js?v=2898e84a"></script>
+      <script src="_static/documentation_options.js?v=2d01bde5"></script>
       <script src="_static/doctools.js?v=9bcbadda"></script>
       <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>

diff --git a/spark.html b/spark.html
@@ -6,14 +6,14 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Setting up Pubmed Parser with PySpark &mdash; Pubmed Parser 0.5.2.dev7+gcbf0b48 documentation</title>
+  <title>Setting up Pubmed Parser with PySpark &mdash; Pubmed Parser 0.5.2.dev8+ge27f0a6 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
 
 
       <script src="_static/jquery.js?v=5d32c60e"></script>
       <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-      <script src="_static/documentation_options.js?v=2898e84a"></script>
+      <script src="_static/documentation_options.js?v=2d01bde5"></script>
       <script src="_static/doctools.js?v=9bcbadda"></script>
       <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>