A pipeline to analyse small RNA expression using Illumina sequencing data
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Updated
Jan 15, 2023 - R
A pipeline to analyse small RNA expression using Illumina sequencing data
A little script that looks for piRNA clusters based on small RNA library coverage
The scramAligner pipeline is designer to align small RNA reads to references sequences with no mis-matches. There is no requirement for reference index building. The pipeline is ideally suited to analysis of siRNAs generated from transgenes or viruses. Scripts for visualising alignments are also provided
Snakemake workflow for processing small RNA-seq libaries
JBrowse plugin that supports smallRNA alignments
R Markdown files for analyses of rice small RNA, gene expression and DNA methylation
A comprehensive collection of long inverted repeats in 424 eukaryotic genomes
Pipeline to analyze small RNAs from single-cells
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
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