Set clinker to be run remotely from a server
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Updated
Aug 29, 2021 - PHP
Set clinker to be run remotely from a server
Bioinformatics pipeline for binding sites prediction
Finding regions of similarity between plasmids
R package to visualize Synteny across biological species
analysis of synteny across animals
[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.
Pipeline to create phage genome synteny graphics from genbank files
Run and compare algorithms for phylogenetic reconciliation and super-reconciliation
AKRUP: ancestral karyotype reconstruction universal pipeline
R package for the reproducible detection of synteny blocks using genetic map data
Query sequence database by HMMs arranged in predefined synteny structure
AccuSyn: An Accurate Web-based Genome Synteny Browser
A visualization tool for viewing MCscanX Synteny Collinearity files (outdated please check description or readme)
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints
CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
Trace intervals between genomes using a synteny map
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