v0.2.3

TrixiParticles v0.2.3

Diff since v0.2.2

Merged pull requests:

• Reopen #221: Transport Velocity for EDAC (#436) (@LasNikas)
• Complex shapes docs (#587) (@LasNikas)
• Cleanup examples (#592) (@svchb)
• Mark development version 0.2.3 (#595) (@svchb)
• Add citation bibliography (#596) (@LasNikas)
• Prepare CI for 1.11 release (#599) (@svchb)
• Fix moving boundaries (#603) (@LasNikas)
• Remove soundspeed from openboundary system (#605) (@svchb)
• Skip empty systems (#606) (@svchb)
• Artificial Density Diffusion should only be applied to the same system (#608) (@svchb)
• Remove unsafe bitsets (#610) (@svchb)
• Bump crate-ci/typos from 1.23.6 to 1.24.3 (#612) (@dependabot[bot])
• Add YouTube video of JuliaCon talk to README (#614) (@efaulhaber)
• Rename WindingNumberHorman to WindingNumberHormann (#615) (@LasNikas)
• [paper] Fix formatting of citations (#616) (@giordano)
• [docs] Point to downloads page to install julia (#617) (@giordano)
• Fix sign in OutFlow (#621) (@LasNikas)
• Bump crate-ci/typos from 1.24.3 to 1.25.0 (#624) (@dependabot[bot])
• Fix tests for TimerOutputs (#626) (@efaulhaber)
• CompatHelper: bump compat for GPUArraysCore to 0.2, (keep existing compat) (#628) (@github-actions[bot])
• Fix getting started docs (#631) (@efaulhaber)
• Fix plotting of ODESolution (#632) (@efaulhaber)
• CompatHelper: add new compat entry for Plots at version 1 for package docs, (keep existing compat) (#634) (@github-actions[bot])

Closed issues:

• Add tests for Monaghan-Kajtar BC (#265)
• [Docs] Getting started page claims a plot is automatically diplayed, but it isn't (#629)

v0.2.2

TrixiParticles v0.2.2

Diff since v0.2.1

Merged pull requests:

• Mark development release 0.2.2 (#590) (@svchb)
• CompatHelper: add new compat entry for DelimitedFiles at version 1, (keep existing compat) (#593) (@github-actions[bot])
• Fix threaded winding number calculation (#594) (@efaulhaber)

v0.2.1

TrixiParticles v0.2.1

Diff since v0.2.0

Merged pull requests:

• add Invalidations workflow (#86) (@ranocha)
• Reopen #351: Complex shapes (#439) (@LasNikas)
• Support different systems in Interpolation (#505) (@svchb)
• Use PrecomputedNeighborhoodSearch for the oscillating beam (#544) (@efaulhaber)
• GPU-compatible neighborhood search (#563) (@efaulhaber)
• Fix viscosity calculation when using two different fluids (#569) (@svchb)
• Mark dev version (#576) (@svchb)
• Boundary model for open boundaries (#577) (@LasNikas)
• Inline viscosity (#578) (@efaulhaber)
• Make SolutionSavingCallback work on GPUs (#579) (@efaulhaber)
• Fix InitialCondition in 1D (#580) (@efaulhaber)
• Add argument t to source_terms (#582) (@LasNikas)
• Add plot recipe for initial condition (#585) (@LasNikas)
• Bump crate-ci/typos from 1.22.9 to 1.23.6 (#586) (@dependabot[bot])
• Prepare release 0.2.1 (#589) (@svchb)
• Add compat entry for FileIO (#591) (@efaulhaber)

Closed issues:

• Add Interpolation support for TLSPH (#464)
• Different errors with and without threading (#481)
• Fix viscosity for two different fluids (#540)

v0.2.0

TrixiParticles v0.2.0

Diff since v0.1.3

Merged pull requests:

• JOSS paper 2024 (#491) (@LasNikas)
• Add Viscosity Formulation as per Morris et al. (#504) (@svchb)
• Rewrite @threaded macro to work with GPUs (#534) (@efaulhaber)
• Set to development version 0.1.4 (#549) (@svchb)
• Use new v0.3 release of PointNeighbors.jl (#550) (@efaulhaber)
• CompatHelper: add new compat entry for KernelAbstractions at version 0.9, (keep existing compat) (#551) (@github-actions[bot])
• Fix function name (#554) (@LasNikas)
• Manually set GPUArrays compat (#555) (@svchb)
• Prepare Release 0.2 (#557) (@svchb)
• Update dev (#558) (@efaulhaber)
• Release v0.2 (#561) (@efaulhaber)
• Use new v0.4 release of PointNeighbors.jl (#562) (@efaulhaber)
• Cleanup Viscosity/Boundary Model (#566) (@svchb)
• Add custom_quantities... to the trxi2vtk wrapper (#567) (@LasNikas)
• Bump crate-ci/typos from 1.21.0 to 1.22.9 (#571) (@dependabot[bot])
• Use @threaded macro from PointNeighbors.jl (#573) (@efaulhaber)

Closed issues:

• Move viscosity from BoundaryModel to BoundarySPHSystem (#488)

v0.1.3

TrixiParticles v0.1.3

Diff since v0.1.2

Merged pull requests:

• Add open boundaries (#442) (@LasNikas)
• Example on how to save interpolated planes using postprocessing callback (#462) (@svchb)
• Add type GPUSystem to determine if a system is stored on the CPU or GPU (#532) (@efaulhaber)
• Clean up callback conditions (#538) (@efaulhaber)
• Bump julia-actions/cache from 1 to 2 (#541) (@dependabot[bot])
• Precompute git hash to avoid overhead (#542) (@efaulhaber)
• Move timers and @trixi_timeit to TrixiBase.jl (#543) (@efaulhaber)
• Update Michael's affiliation to U of Augsburg (#545) (@sloede)
• Add trixi2vtk wrapper for InitialCondition (#546) (@LasNikas)
• Release 0.1.3 (#548) (@svchb)

v0.1.2

TrixiParticles v0.1.2

Diff since v0.1.1

Merged pull requests:

• The Grand ReReReReReopening the final straw part 9: Intra-Particle-Force Surface Tension model (#434) (@svchb)
• Reopen #390: Update callback (#440) (@LasNikas)
• Recursively convert (adapt) Semidiscretization object to GPU types with Adapt.jl (#492) (@efaulhaber)
• Set to development version (#511) (@svchb)
• CompatHelper: add new compat entry for Adapt at version 4, (keep existing compat) (#515) (@github-actions[bot])
• Move neighborhood search to a new standalone package (#516) (@efaulhaber)
• Change compat of Adapt to 3 (#517) (@efaulhaber)
• CompatHelper: bump compat for Adapt to 4, (keep existing compat) (#519) (@github-actions[bot])
• Fix n-body benchmark (#525) (@efaulhaber)
• Remove pinv in correction matrix inversion step (#526) (@efaulhaber)
• Create output directory for post process callback if it doesn't exist (#527) (@efaulhaber)
• Manually increase CairoMakie Version (#528) (@svchb)
• Modify error message (#531) (@LasNikas)
• Adapt some code to GPUs (#533) (@efaulhaber)
• Release 0.1.2 (#536) (@svchb)
• Change to 0.1.3-dev (#537) (@svchb)

v0.1.1

TrixiParticles v0.1.1

Diff since v0.1.0

Added a basic implementation of DEM.

Merged pull requests:

• The grand reopening Part 1: Validation setup for dam break (#431) (@svchb)
• The grand reopening Part 2: Add overview page (#432) (@svchb)
• The grand reopening Part 3: Add basic DEM (#433) (@svchb)
• Reopen #382: Extrude shapes/geometry (#437) (@LasNikas)
• Warn user when choosing wrong wall viscosity model (#445) (@LasNikas)
• Don't cancel all running CI jobs when one job fails (#446) (@efaulhaber)
• Add plots and package installation instruction to docs (#449) (@efaulhaber)
• Revise falling spheres example (#455) (@efaulhaber)
• Fix initialization of SolutionSavingCallback (#456) (@efaulhaber)
• Revise custom quantities (#457) (@efaulhaber)
• Make threading optional for nhs update (#460) (@svchb)
• Fix metadata option for TLSPH system (#461) (@efaulhaber)
• Add more images to readme.md (#463) (@svchb)
• Add missing semicolon for kwarg (#465) (@LasNikas)
• Add wrapper for internal use of interpolation functions (#466) (@LasNikas)
• Use the same beam resolution for validation as in the reference paper (#467) (@efaulhaber)
• Replace externally hosted density diffusion images in docs (#468) (@efaulhaber)
• Fill "Cite Us" section (#469) (@efaulhaber)
• Ignore more dep warnings to fix test runs. (#471) (@svchb)
• Optimization bnd pressure computation (#475) (@svchb)
• Create SECURITY.md (#477) (@ranocha)
• Bump crate-ci/typos from 1.18.2 to 1.19.0 (#480) (@dependabot[bot])
• Add show for SolutionSavingCallback with save_times (#485) (@efaulhaber)
• Make array types in structs generic (#486) (@efaulhaber)
• Fix another closures error on macOS-ARM (#489) (@efaulhaber)
• Fix doc string of solution_saving.jl (#499) (@svchb)
• Remove TrixiParticles dependency in docs environment (#501) (@efaulhaber)
• Bump julia-actions/setup-julia from 1 to 2 (#506) (@dependabot[bot])
• Bump crate-ci/typos from 1.19.0 to 1.21.0 (#507) (@dependabot[bot])
• Document proper release management (#508) (@sloede)
• Mark Release V0.1.1 (#510) (@svchb)

Closed issues:

• Add nicer simulation videos/pictures to README (#256)
• Add package registration information back to readme (#260)
• Diagrams (#337)
• Storage for docs images (#448)
• Add DOI badge, bibtex citation info to README.md; create CITATION.bib file (#450)
• Threading in grid_nhs.jl produces a large error (#451)
• Developer Meeting (#459)
• Fix Base.show() when using "SolutionSavingCallback" with save_times (#487)
• Improve performance of simulations involving large particle systems which are not in contact (#497)

v0.1.0

TrixiParticles v0.1.0

Merged pull requests:

• Limit pressure to be non-negative to allow SummationDensity with free surfaces (#1) (@efaulhaber)
• Add SolutionSavingCallback (#3) (@efaulhaber)
• Prepare BC and viscosity for EISPH (#4) (@LasNikas)
• Add pixie_include (#5) (@efaulhaber)
• Fix SolutionSavingCallback (#6) (@efaulhaber)
• Write boundary coordinates to VTK (#7) (@efaulhaber)
• Add rectangular tank setup with 2D and 3D support. (#8) (@LasNikas)
• Fix saving callback (again) (#9) (@efaulhaber)
• Dummy particle boundary conditions (#11) (@efaulhaber)
• Add CI workflow and runtests.jl (#12) (@efaulhaber)
• Run CI on PR (#14) (@efaulhaber)
• Implement and test the deformation gradient of a solid (#15) (@efaulhaber)
• Run CI on pull_request_target (#17) (@efaulhaber)
• Implement and test PK1 and PK2 stress tensors (#18) (@efaulhaber)
• Improve performance of the deformation gradient (#19) (@efaulhaber)
• Implement structure dynamics and oscillating beam example (#20) (@efaulhaber)
• Fix oscillating beam example (#21) (@efaulhaber)
• Refactor for multiphysics applications (#22) (@efaulhaber)
• Add fluid-structure interaction (#24) (@efaulhaber)
• Add correction force for structural dynamics (#25) (@LasNikas)
• Refactor BC and fix FSI (#26) (@efaulhaber)
• add moving boundaries support (#27) (@LasNikas)
• Fix Monaghan-Kajtar boundary particle force (#28) (@efaulhaber)
• Fix tests (#30) (@efaulhaber)
• Fix neighborhood search (#31) (@efaulhaber)
• Fix FSI (again) (#32) (@efaulhaber)
• Fix 3D dam break (#33) (@efaulhaber)
• Revise examples (#34) (@efaulhaber)
• Merge dev with all the FSI code into main (#35) (@efaulhaber)
• Remove type instabilities and allocations (#36) (@efaulhaber)
• Compute deformation gradient in matrix form (#38) (@efaulhaber)
• Extract foreach_enumerate (#39) (@efaulhaber)
• Properly implement dummy particle boundary conditions (#40) (@efaulhaber)
• Add damping force and allow selecting the faces to create for the rectangular setup (#41) (@svchb)
• Refactoring setups (#42) (@LasNikas)
• Implement n-body simulations (#44) (@efaulhaber)
• Implement SummaryCallback to print fancy output (#45) (@efaulhaber)
• Hotfix: Fix NHS for FSI (again...) (#46) (@efaulhaber)
• Add system tests (smoke tests for now) (#47) (@efaulhaber)
• Cancel redundant CI tests automatically (#50) (@efaulhaber)
• Use SciML style guide and automatic formatting (#51) (@efaulhaber)
• Add format check to CI (#55) (@efaulhaber)
• Add unit tests for setups (#56) (@LasNikas)
• Add unit tests for NHS (#57) (@LasNikas)
• Fix tank setup (#58) (@LasNikas)
• Dummy bc for fsi (#59) (@LasNikas)
• Split rhs! into kick! and drift! and use DynamicalODEProblem (#60) (@efaulhaber)
• Simplify generation of fluid containers (#62) (@svchb)
• Isolate, time, and reorganize tests (#63) (@efaulhaber)
• Make NHS cheaper when only a few particles moved (#64) (@efaulhaber)
• Rename get_* functions (#68) (@efaulhaber)
• Rework callbacks (#69) (@efaulhaber)
• Consistent setups (#70) (@LasNikas)
• Enable coverage in CI for unit and integration tests (#72) (@efaulhaber)
• Revise tests for the solid container (#73) (@efaulhaber)
• Add tests for the fluid container (#74) (@efaulhaber)
• Upload coverage before running system tests (#77) (@efaulhaber)
• Add function kernel_grad to compute the gradient (#78) (@efaulhaber)
• [Hotfix] Change destats to stats and require OrdinaryDiffEq 6.49 for testing (#79) (@efaulhaber)
• Add pixie2vtk(coordinates) to visualize a coordinate array (#80) (@efaulhaber)
• Add README with badges (#81) (@efaulhaber)
• Rename Pixie to TrixiParticles (#82) (@efaulhaber)
• add Dependabot (#83) (@ranocha)
• run CI not on every push but only on main (#84) (@ranocha)
• add CompatHelper (#85) (@ranocha)
• fix some typos in examples (#88) (@ranocha)
• switch to SimpleUnPack (#89) (@ranocha)
• some performance improvements (#90) (@ranocha)
• Bump actions/checkout from 2 to 3 (#91) (@dependabot[bot])
• In Equations rename density to rho (#92) (@svchb)
• Add check for smoothing kernel dimensionality (#93) (@svchb)
• avoid computing hashes twice in particles_in_cell (#96) (@ranocha)
• Error message when both dt and interval are set for SolutionSavingCallback and add verbose option (#99) (@svchb)
• rework moving boundaries and support for BoundaryModelDummyParticles (#101) (@LasNikas)
• CompatHelper: add new compat entry for WriteVTK at version 1, (keep existing compat) (#102) (@github-actions[bot])
• Add new compat entries from CompatHelper (#113) (@efaulhaber)
• CompatHelper: add new compat entry for Polyester at version 0.7 for package test, (keep existing compat) (#114) (@github-actions[bot])
• Merge shapes (#115) (@LasNikas)
• Simplify call to smoothing kernels (#116) (@svchb)
• Add setters for density (#117) (@svchb)
• Add test directory to coverage report (#119) (@efaulhaber)
• Make NHS more abstract by not using containers (#121) (@efaulhaber)
• Add optional prefix to output files (#122) (@svchb)
• Incorrect behavior when setup.masses is empty (#123) (@svchb)
• bug fix for density in boundary (#125) (@svchb)
• Update NHS with coordinates array instead of coordinates function (#127) (@efaulhaber)
• Replace particle-neighbor loops by a function for_particle_neighbor (#130) (@efaulhaber)
• Make density mandatory (#134) (@LasNikas)
• Fix mean density for solid-fluid interaction (#136) (@efaulhaber)
• Extract function to fix NHS on macOS ARM (#137) (@efaulhaber)
• Create SpellCheck.yml (#138) (@ranocha)
• change directory structure (#139) (@LasNikas)
• Replace pathof(...) by pkgdir(...) (#140) (@sloede)
• Big refactoring: extract schemes and get rid of container types (#142) (@efaulhaber)
• Kernel correction for summation density (#145) (@svchb)
• delete container.jl in /general (#146) (@LasNikas)
• Move containers into schemes (#147) (@LasNikas)
• Make dispatching more readable and remove all SolidParticleContainer stuff from the boundary container (#148) (@efaulhaber)
• Fix includes and unit tests (#149) (@efaulhaber)
• Add @autoinfiltrate for simple, ad-hoc interactive debugging (#150) (@sloede)
• Fix example tests (#151) (@efaulhaber)
• transform container into system (#152) (@LasNikas)
• Implements the Akinci Free Surface correction term. (#153) (@svchb)
• Merge test files to get coverage back up again (#154) (@efaulhaber)
• Kernel gradient correction method (#155) (@svchb)
• Bump crate-ci/typos from 1.14.9 to 1.14.10 (#157) (@dependabot[bot])
• rename files (#158) (@LasNikas)
• Implement InitialCondition and store that in the systems (#159) (@efaulhaber)
• update! solid system after update_nhs! and name update steps instead of numbering (#161) (@LasNikas)
• make update! more abstract (#162) (@LasNikas)
• reformat (after renaming) (#163) (@LasNikas)
• move boundary models into corresponding folders (#164) (@LasNikas)
• adapt index.md (#165) (@LasNikas)
• Remove Codecov annotations (#166) (@efaulhaber)
• Bump crate-ci/typos from 1.14.10 to 1.14.11 (#167) (@dependabot[bot])
• Run Dependabot monthly instead of weekly (#168) (@ranocha)
• only free slip condition (#169) (@LasNikas)
• Viscous interaction adami (#170) (@LasNikas)
• Entropically damped artificial compressibility for sph (EDAC) (#171) (@LasNikas)
• Restrict JuliaFormatter to readable SciML style version (#173) (@efaulhaber)
• Remove Codecov annotations (for real this time) (#175) (@efaulhaber)
• Update JuliaFormatter and use YAS style nesting (#176) (@efaulhaber)
• Density Reinitialisation (#177) (@svchb)
• fix WCSPH rhs.jl (#178) (@LasNikas)
• consistent dv access for ContinuityDensity (#180) (@LasNikas)
• move viscosity.jl file into fluid/ (#181) (@LasNikas)
• Add more detailed interaction timers (#182) (@efaulhaber)
• Unify boundary and fluid systems in one RHS for WCSPH and add debug output option (#183) (@svchb)
• Add supplementary files and update readme (#184) (@svchb)
• WCSPH Pressure eq consistency (#185) (@svchb)
• Periodic boundaries (#186) (@efaulhaber)
• Implement 3D sphere shapes and revise the sphere shape interface (#188) (@efaulhaber)
• Bump crate-ci/typos from 1.14.11 to 1.15.9 (#190) (@dependabot[bot])
• Fix typos (#191) (@efaulhaber)
• Fix file overwriting issue with saving callback (#192) (@efaulhaber)
• Fix shape positions (#193) (@efaulhaber)
• Fix file overwriting issue with saving callback (again) (#194) (@efaulhaber)
• Delete bending beam example (#195) (@efaulhaber)
• CompatHelper: add new compat entry for ForwardDiff at version 0.10, (keep existing compat) (#196) (@github-actions[bot])
• Fix wall velocity (#197) (@LasNikas)
• Write meta data to vtk files (#199) (@svchb)
• Use variable dict indent in JulaFormatter (#201) (@efaulhaber)
• Implement set operations for initial conditions (#202) (@efaulhaber)
• fix example files (#203) (@LasNikas)
• Bump crate-ci/typos from 1.15.9 to 1.16.1 (#205) (@dependabot[bot])
• Avoid wasteful allocations (#206) (@LasNikas)
• Fix Monaghan-Kajtar BC and dam break examples (#207) (@efaulhaber)
• Automatically reset threads at the beginning of a simulation (#208) (@efaulhaber)
• Move NHS files (#209) (@efaulhaber)
• Rename SpatialHashingSearch to GridNeighborhoodSearch (#210) (@efaulhaber)
• Fix NHS split cell bug (#211) (@efaulhaber)
• Rewrite NHS to use periodic cell indices instead of ghost cells and enable 3D periodicity (#212) (@efaulhaber)
• Allow arbitrary domain sizes with periodic GridNeighborhoodSearch (#213) (@efaulhaber)
• Replace @unpack by Julia's native property destructuring syntax (#215) (@efaulhaber)
• Bump crate-ci/typos from 1.16.1 to 1.16.9 (#216) (@dependabot[bot])
• Fix SummationDensity for boundaries (#217) (@efaulhaber)
• Allow negative particle pressure (#218) (@efaulhaber)
• custom quantities in trixi2vtk also for non-simulated data (#220) (@LasNikas)
• New boundary density calculators PressureZeroing and PressureMirroring (#223) (@efaulhaber)
• Fix testcases (#224) (@svchb)
• Comp...