update gitops.json

uc-cdis · May 21, 2024 · ddf2200 · ddf2200
1 parent 8069290
commit ddf2200
Showing 1 changed file with 4 additions and 219 deletions.
diff --git a/jenkins-dcp.planx-pla.net/portal/gitops.json b/jenkins-dcp.planx-pla.net/portal/gitops.json
@@ -608,14 +608,7 @@
       "_subject_id": {
         "chartType": "count",
         "title": "Subjects"
-      },
-      "annotated_sex": {
-        "chartType": "pie",
-        "title": "Annotated Sex"
-      },
-      "race": {
-        "chartType": "bar",
-        "title": "Race"
+      }
       },
       "fileCounts": false
     },
@@ -626,82 +619,19 @@
           "fields": [
             "programs_name",
             "project_id",
-            "consent_codes",
-            "studies_submitter_id",
-            "geographic_site",
             "data_type",
             "data_format"
           ]
-        },
-        {
-          "title": "Subject",
-          "searchFields": [
-            "submitter_id"
-          ],
-          "fields": [
-            "annotated_sex",
-            "race",
-            "ethnicity",
-            "hispanic_subgroup",
-            "subcohort",
-            "weight_baseline",
-            "bmi_baseline",
-            "height_baseline",
-            "current_smoker_baseline",
-            "ever_smoker_baseline"
-          ]
-        },
-        {
-          "title": "Harmonized Variables",
-          "fields": [
-            "total_cholesterol",
-            "hdl",
-            "ldl",
-            "triglycerides",
-            "fasting_lipids",
-            "lipid_lowering_medication",
-            "cac_score",
-            "cac_volume",
-            "carotid_plaque",
-            "carotid_stenosis",
-            "cimt_1",
-            "cimt_2",
-            "bp_diastolic",
-            "bp_systolic",
-            "antihypertensive_meds",
-            "vte_case_status",
-            "vte_followup_start_age",
-            "vte_prior_history",
-            "basophil_ncnc_bld",
-            "eosinophil_ncnc_bld",
-            "hematocrit_vfr_bld",
-            "hemoglobin_mcnc_bld",
-            "lymphocyte_ncnc_bld",
-            "mch_entmass_rbc",
-            "mchc_mcnc_rbc",
-            "mcv_entvol_rbc",
-            "monocyte_ncnc_bld",
-            "neutrophil_ncnc_bld",
-            "platelet_ncnc_bld",
-            "pmv_entvol_bld",
-            "rbc_ncnc_bld",
-            "rdw_ratio_rbc",
-            "wbc_ncnc_bld"
-          ]
         }
       ]
     },
     "table": {
       "enabled": true,
       "fields": [
         "project_id",
+        "file_id",
         "data_format",
-        "race",
-        "annotated_sex",
-        "ethnicity",
-        "bp_diastolic",
-        "hdl",
-        "ldl"
+        "breed"   
       ]
     },
     "dropdowns": {
@@ -740,156 +670,11 @@
     "guppyConfig": {
       "dataType": "subject",
       "nodeCountTitle": "Subjects",
-      "fileCountField": "file_count",
       "fieldMapping": [
         {
           "field": "_subject_id",
           "name": "Subject ID"
-        },
-        {
-          "field": "consent_codes",
-          "name": "data use restriction"
-        },
-        {
-          "field": "cac_score",
-          "name": "CAC Score"
-        },
-        {
-          "field": "cac_volume",
-          "name": "CAC Volume"
-        },
-        {
-          "field": "cimt_1",
-          "name": "CIMT 1"
-        },
-        {
-          "field": "cimt_2",
-          "name": "CIMT 2"
-        },
-        {
-          "field": "vte_case_status",
-          "name": "VTE Case Status"
-        },
-        {
-          "field": "vte_followup_start_age",
-          "name": "VTE Followup Start Age"
-        },
-        {
-          "field": "vte_prior_history",
-          "name": "VTE Prior History"
-        },
-        {
-          "field": "bp_diastolic",
-          "name": "BP Diastolic"
-        },
-        {
-          "field": "bp_systolic",
-          "name": "BP Systolic"
-        },
-        {
-          "field": "basophil_ncnc_bld",
-          "name": "Basophils Number Concentration Bld"
-        },
-        {
-          "field": "eosinophil_ncnc_bld",
-          "name": "Eosinophils Number Concentration Bld"
-        },
-        {
-          "field": "hdl",
-          "name": "HDL"
-        },
-        {
-          "field": "hematocrit_vfr_bld",
-          "name": "Hematocrit Fraction of Volume Bld"
-        },
-        {
-          "field": "hemoglobin_mcnc_bld",
-          "name": "Hemoglobin Mass Concentration Bld"
-        },
-        {
-          "field": "ldl",
-          "name": "LDL"
-        },
-        {
-          "field": "lymphocyte_ncnc_bld",
-          "name": "Lymphocytes Number Concentration Bld"
-        },
-        {
-          "field": "mch_entmass_rbc",
-          "name": "MCH Average Mass Rbc"
-        },
-        {
-          "field": "mchc_mcnc_rbc",
-          "name": "MCHC Mass Concentration Rbc"
-        },
-        {
-          "field": "mcv_entvol_rbc",
-          "name": "MCV Average Volume Rbc"
-        },
-        {
-          "field": "monocyte_ncnc_bld",
-          "name": "Monocytes Number Concentration Bld"
-        },
-        {
-          "field": "neutrophil_ncnc_bld",
-          "name": "Neutrophils Number Concentration Bld"
-        },
-        {
-          "field": "platelet_ncnc_bld",
-          "name": "Platelets Number Concentration Bld"
-        },
-        {
-          "field": "pmv_entvol_bld",
-          "name": "PMV Mean Volume Bld"
-        },
-        {
-          "field": "rbc_ncnc_bld",
-          "name": "Red Blood Cells Number Concentration Bld"
-        },
-        {
-          "field": "rdw_ratio_rbc",
-          "name": "Red Cell Distribution Width Ratio Rbc"
-        },
-        {
-          "field": "wbc_ncnc_bld",
-          "name": "White Blood Cells Number Concentration Bld"
-        },
-        {
-          "field": "bmi_baseline",
-          "name": "BMI Baseline"
-        },
-        {
-          "field": "current_smoker_baseline",
-          "name": "Current Smoker Baseline"
-        },
-        {
-          "field": "ever_smoker_baseline",
-          "name": "Ever Smoker Baseline"
-        },
-        {
-          "field": "geographic_site",
-          "name": "Geographic Site"
-        },
-        {
-          "field": "height_baseline",
-          "name": "Height Baseline"
-        },
-        {
-          "field": "total_cholesterol",
-          "name": "Total Cholesterol"
-        },
-        {
-          "field": "triglycerides",
-          "name": "Triglycerides"
-        },
-        {
-          "field": "studies_submitter_id",
-          "name": "Study"
-        },
-        {
-					"field": "programs_name",
-					"name": "Program"
-				}
+        }
       ],
       "manifestMapping": {
         "resourceIndexType": "file",