fix(data): rollback to old value

uc-cdis · Jul 21, 2023 · b622a9a · b622a9a
1 parent 5809d73
commit b622a9a
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Showing 8 changed files with 38 additions and 36 deletions.
diff --git a/tests/graphql/data/biospec1.json b/tests/graphql/data/biospec1.json
@@ -76,7 +76,7 @@
             "submitter_id": "BLGSP-71-06-00005-99A-01D"
         },
         "submitter_id": "CGCI-file-3",
-        "file_size": 59627182820,
+        "file_size": 5962718282,
         "file_name": "C500.CGCI-file3.bam",
         "md5sum": "c415baa7b6359835b39360c0159aef26"
     }

diff --git a/tests/graphql/data/biospec2.json b/tests/graphql/data/biospec2.json
@@ -13,7 +13,7 @@
             "submitter_id": "BLGSP-71-06-00005-01A-21D"
         },
         "submitter_id": "CGCI-file-4",
-        "file_size": 59627182820,
+        "file_size": 5962718282,
         "file_name": "C500.CGCI-file4.bam",
         "md5sum": "35b39360cc41a7b635980159aef265ba"
     }, {
@@ -22,7 +22,7 @@
             "submitter_id": "BLGSP-71-06-00005-01A-21D"
         },
         "submitter_id": "CGCI-file-5",
-        "file_size": 59627182820,
+        "file_size": 5962718282,
         "file_name": "C500.CGCI-file-6.bam",
         "md5sum": "35980159aef265ba35b39360cc41a7b6"
     }

diff --git a/tests/graphql/data/bulk1.json b/tests/graphql/data/bulk1.json
@@ -30,12 +30,12 @@
     "doc_format": "JSON"
   }, 
   {
-    "doc": "{\"file_name\": \"C500.CGCI-file1.bam\", \"md5sum\": \"35b39360cc41a7b635980159aef265ba\", \"submitter_id\": \"CGCI-file-1\", \"aliquots\": {\"submitter_id\": \"BLGSP-71-06-00005-99A-01D\"}, \"file_size\": 59627182820, \"type\": \"file\"}",
+    "doc": "{\"file_name\": \"C500.CGCI-file1.bam\", \"md5sum\": \"35b39360cc41a7b635980159aef265ba\", \"submitter_id\": \"CGCI-file-1\", \"aliquots\": {\"submitter_id\": \"BLGSP-71-06-00005-99A-01D\"}, \"file_size\": 5962718282, \"type\": \"file\"}",
     "name": "CGCI-file-1.json", 
     "doc_format": "JSON"
   }, 
   {
-    "doc": "{\"file_name\": \"C500.CGCI-file2.bam\", \"md5sum\": \"35980159aef265ba35b39360cc41a7b6\", \"submitter_id\": \"CGCI-file-2\", \"aliquots\": {\"submitter_id\": \"BLGSP-71-06-00005-99A-01D\"}, \"file_size\": 59627182820, \"type\": \"file\"}",
+    "doc": "{\"file_name\": \"C500.CGCI-file2.bam\", \"md5sum\": \"35980159aef265ba35b39360cc41a7b6\", \"submitter_id\": \"CGCI-file-2\", \"aliquots\": {\"submitter_id\": \"BLGSP-71-06-00005-99A-01D\"}, \"file_size\": 5962718282, \"type\": \"file\"}",
     "name": "CGCI-file-2.json", 
     "doc_format": "JSON"
   }, 

diff --git a/tests/graphql/data/read_group.json b/tests/graphql/data/read_group.json
@@ -10,6 +10,6 @@
     "library_strategy": "WXS",
     "library_name": "library1",
     "is_paired_end": false,
-    "read_length": 12345,
+    "read_length": 59627182820,
     "read_group_name": "readgroup-1"
 }
diff --git a/tests/graphql/data/submitted_unaligned_reads.json b/tests/graphql/data/submitted_unaligned_reads.json
@@ -5,7 +5,7 @@
     },
     "submitter_id": "CGCI-file-2",
     "data_format": "BAM",
-    "file_size": 5962718282,
+    "file_size": 59627182820,
     "file_name": "C500.CGCI-file1.bam",
     "md5sum": "35b39360cc41a7b635980159aef265ba",
     "experimental_strategy": "WGS",

diff --git a/tests/graphql/data/submitted_unaligned_reads_invalid.json b/tests/graphql/data/submitted_unaligned_reads_invalid.json
@@ -5,7 +5,7 @@
     },
     "submitter_id": "CGCI-file-2",
     "data_format": "BAM",
-    "file_size": 59627182820,
+    "file_size": 5962718282,
     "file_name": "C500.CGCI-file1.bam",
     "experimental_strategy": "WGS",
     "data_type": "Unaligned Reads",

diff --git a/tests/graphql/test_graphql.py b/tests/graphql/test_graphql.py
@@ -1269,34 +1269,34 @@ def test_without_path_order(client, submitter, pg_driver_clean, cgci_blgsp):
         }
     }, r.data
 
-#
-# def test_file_size_long(client, submitter, pg_driver_clean, cgci_blgsp):
-#     """Assert the long type is working as float"""
-#     put_example_entities_together(client, pg_driver_clean, submitter)
-#
-#     r = client.post(
-#         path,
-#         headers=submitter,
-#         data=json.dumps(
-#             {
-#                 "query": """
-#                 query Test {
-#                     submitted_unaligned_reads (
-#                       order_by_desc: "file_size",
-#                     )
-#                     { submitter_id file_size }
-#                 }
-#             """
-#             }
-#         ),
-#     )
-    # assert r.json == {
-    #     "data": {
-    #         "submitted_unaligned_reads": [
-    #             {"submitter_id": "CGCI-file-2", "file_size": 5962718282},
-    #         ]
-    #     }
-    # }, r.data
+
+def test_file_size_long(client, submitter, pg_driver_clean, cgci_blgsp):
+    """Assert the long type is working as float"""
+    post_example_entities_together(client, pg_driver_clean, submitter)
+
+    r = client.post(
+        path,
+        headers=submitter,
+        data=json.dumps(
+            {
+                "query": """
+                query Test {
+                    read_group (
+                      order_by_desc: "read_length",
+                    )
+                    { submitter_id, read_length }
+                }
+            """
+            }
+        ),
+    )
+    assert r.json == {
+        "data": {
+            "submitted_unaligned_reads": [
+                {"submitter_id": "test-readgroup-1", "read_length": 59627182820.0},
+            ]
+        }
+    }, r.data
 
 
 def test_read_group_with_path_to_case(client, submitter, pg_driver_clean, cgci_blgsp):

diff --git a/tests/graphql/utils.py b/tests/graphql/utils.py
@@ -25,6 +25,8 @@
     "diagnosis.json",
     "exposure.json",
     "treatment.json",
+    "read_group.json",
+    # "submitted_unaligned_reads.json",
 ]
 
 PATH = "/v0/submission/graphql"