Start UCO-gufo profile from base branch

A follow-on patch will regenerate Make-managed files.

Signed-off-by: Alex Nelson <alexander.nelson@nist.gov>

.gitmodules

@@ -1,3 +1,7 @@
+[submodule "dependencies/CDO-Shapes-gufo"]
+	path = dependencies/CDO-Shapes-gufo
+	url = https://github.com/Cyber-Domain-Ontology/CDO-Shapes-gufo.git
+	branch = main
 [submodule "dependencies/UCO"]
 	path = dependencies/UCO
 	url = https://github.com/ucoProject/UCO.git

Makefile

@@ -20,17 +20,14 @@ PYTHON3 ?= python3
 
 all: \
   .venv-pre-commit/var/.pre-commit-built.log \
-  all-ontology \
-  all-shapes
+  all-ontology
 
 .PHONY: \
   all-dependencies \
   all-ontology \
-  all-shapes \
   check-dependencies \
   check-mypy \
   check-ontology \
-  check-shapes \
   check-supply-chain \
   check-supply-chain-cdo-profile \
   check-supply-chain-pre-commit \
@@ -41,7 +38,9 @@ all: \
 # dependency on other profiles.
 .git_submodule_init_imports.done.log: \
   .gitmodules
-	# TODO - Initialize non-CDO submodule here.
+	git submodule update \
+	  --init \
+	  dependencies/CDO-Shapes-gufo
 	touch $@
 
 .git_submodule_init.done.log: \
@@ -104,17 +103,11 @@ all-ontology: \
 	$(MAKE) \
 	  --directory ontology
 
-all-shapes: \
-  all-dependencies
-	$(MAKE) \
-	  --directory shapes
-
 check: \
   .venv-pre-commit/var/.pre-commit-built.log \
   check-mypy \
   check-dependencies \
-  check-ontology \
-  check-shapes
+  check-ontology
 	$(MAKE) \
 	  --directory tests \
 	  check
@@ -140,12 +133,6 @@ check-ontology: \
 	  --directory ontology \
 	  check
 
-check-shapes: \
-  all-shapes
-	$(MAKE) \
-	  --directory shapes \
-	  check
-
 # This target's dependencies potentially modify the working directory's
 # Git state, so it is intentionally not a dependency of check.
 check-supply-chain: \
@@ -192,9 +179,6 @@ clean:
 	@$(MAKE) \
 	  --directory tests \
 	  clean
-	@$(MAKE) \
-	  --directory shapes \
-	  clean
 	@$(MAKE) \
 	  --directory ontology \
 	  clean

dependencies/Makefile

@@ -20,16 +20,9 @@ top_srcdir := $(shell cd .. ; pwd)
 
 uco_srcdir := $(top_srcdir)/dependencies/UCO
 
-RDF_TOOLKIT_JAR := $(uco_srcdir)/lib/rdf-toolkit.jar
-
 all: \
   catalog-v001.xml
 
-$(RDF_TOOLKIT_JAR):
-	@echo "DEBUG:dependencies/Makefile:top_srcdir=$(top_srcdir)" >&2
-	@echo "ERROR:dependencies/Makefile:rdf-toolkit.jar not found.  Did you run `make` from the top source directory?" >&2
-	@test -r $@
-
 catalog-v001.xml: \
   $(top_srcdir)/.venv.done.log \
   $(top_srcdir)/etc/domain_directories.tsv \
@@ -49,51 +42,14 @@ catalog-v001.xml: \
 check: \
   catalog-v001.xml
 
-# TODO: This recipe deletes files generated by Make.  The line deleting
-# example.ttl should be adapted.
 clean:
 	@rm -f \
 	  catalog-v001.xml \
-	  example.ttl \
 	  imports-transitive.ttl
 
-# TODO: Adapt this recipe to normalize a submodule's file, or downloaded
-# file, in the same manner as CDO ontologies are normalized.
-example.ttl: \
-  example/example.owl \
-  $(RDF_TOOLKIT_JAR) \
-  $(top_srcdir)/.venv.done.log
-	source $(top_srcdir)/venv/bin/activate \
-	  && pyshacl \
-	    --shacl UCO/ontology/owl/owl.ttl \
-	    $<
-	java -jar $(RDF_TOOLKIT_JAR) \
-	  --inline-blank-nodes \
-	  --source $< \
-	  --source-format rdf-xml \
-	  --target _$@ \
-	  --target-format turtle
-	mv _$@ $@
-
 # This recipe intentionally does not incorporate CDO ontologies (UCO,
 # CASE, etc.), to avoid redundant imports between multiple profiles.
-# TODO: Adapt this recipe to depend instead on the normalized file, as
-# well as any profile submodules' imports-transitive files.
-# Note that the piping command, analagous to the concatenate ('cat')
-# command but for RDF graph files, will combine all recipe dependencies
-# into one file, using the $^ ("all dependencies") Make variable.
 imports-transitive.ttl: \
-  example.ttl
-	source $(top_srcdir)/venv/bin/activate \
-	  && rdfpipe \
-	    --output-format turtle \
-	    $^ \
-	    > __$@
-	java -jar $(RDF_TOOLKIT_JAR) \
-	  --inline-blank-nodes \
-	  --source __$@ \
-	  --source-format turtle \
-	  --target _$@ \
-	  --target-format turtle
-	rm __$@
+  $(top_srcdir)/dependencies/CDO-Shapes-gufo/dependencies/imports-transitive.ttl
+	cp $< _$@
 	mv _$@ $@

etc/dependency_files.tsv

@@ -1,2 +1,3 @@
-http://example.org/ontology/example/0.0.1	${top_srcdir}/dependencies/example.ttl
-http://example.org/shapes/example	${top_srcdir}/shapes/sh-example.ttl
+http://example.org/shapes/gufo	${top_srcdir}/dependencies/CDO-Shapes-gufo/shapes/sh-gufo.ttl
+http://example.org/ontology/uco-gufo	${top_srcdir}/ontology/uco-gufo.ttl
+http://purl.org/nemo/gufo#/1.0.0	${top_srcdir}/dependencies/CDO-Shapes-gufo/dependencies/gufo.ttl

etc/domain_directories.tsv

@@ -1,2 +1 @@
-https://example.org/	${top_srcdir}/ontology/
 https://ontology.unifiedcyberontology.org/	${top_srcdir}/dependencies/UCO/ontology/

ontology/uco-gufo.ttl

@@ -0,0 +1,37 @@
+# imports: http://purl.org/nemo/gufo#/1.0.0
+# imports: https://ontology.unifiedcyberontology.org/uco/uco/1.3.0
+
+@prefix drafting: <http://example.org/ontology/drafting/> .
+@prefix gufo: <http://purl.org/nemo/gufo#> .
+@prefix owl: <http://www.w3.org/2002/07/owl#> .
+@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
+@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
+@prefix uco-action: <https://ontology.unifiedcyberontology.org/uco/action/> .
+@prefix uco-core: <https://ontology.unifiedcyberontology.org/uco/core/> .
+@prefix uco-identity: <https://ontology.unifiedcyberontology.org/uco/identity/> .
+@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+
+<http://example.org/ontology/uco-gufo>
+	a owl:Ontology ;
+	owl:imports
+		<http://purl.org/nemo/gufo#/1.0.0> ,
+		<https://ontology.unifiedcyberontology.org/uco/uco/1.3.0>
+		;
+	.
+
+uco-action:Action
+	rdfs:subClassOf gufo:Event ;
+	.
+
+uco-core:Event
+	rdfs:subClassOf gufo:Event ;
+	.
+
+uco-identity:Organization
+	rdfs:subClassOf gufo:Object ;
+	.
+
+uco-identity:Person
+	rdfs:subClassOf gufo:Object ;
+	.
+