Update gcycle to be able to read re-gridded GSI increment land files. #586
Workflow file for this run
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| name: Intel Linux Build and Test | |
| on: [push, pull_request, workflow_dispatch] | |
| # Use custom shell with -l so .bash_profile is sourced which loads intel/oneapi/setvars.sh | |
| # without having to do it in manually every step | |
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| # Set I_MPI_CC/F90 so IntelLLVM is used. | |
| env: | |
| cache_key: intel | |
| CC: mpiicx | |
| FC: mpiifx | |
| CXX: mpiicpx | |
| I_MPI_CC: icx | |
| I_MPI_F90: ifx | |
| I_MPI_CXX: icpx | |
| # The jobs are split into: | |
| # 1. a dependency build step (setup), and | |
| # 2. a UFS-utils build and test step (ufs_utils) | |
| # The setup is run once and the environment is cached, | |
| # so each subsequent build and test of UFS-utils can reuse the cached | |
| # dependencies to save time (and compute). | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: checkout # this is to get the ci/spack.yaml file | |
| uses: actions/checkout@v3 | |
| with: | |
| path: ufs_utils | |
| # Cache spack, compiler and dependencies | |
| - name: cache-env | |
| id: cache-env | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| spack | |
| ~/.spack | |
| /opt/intel | |
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ufs_utils/ci/spack.yaml') }} | |
| - name: install-intel-compilers | |
| run: | | |
| wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | |
| sudo apt-get update | |
| sudo apt-get install intel-oneapi-dev-utilities intel-oneapi-mpi-devel intel-oneapi-openmp intel-oneapi-compiler-fortran intel-oneapi-compiler-dpcpp-cpp | |
| echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile | |
| # Install dependencies using Spack | |
| - name: install-dependencies-with-spack | |
| if: steps.cache-env.outputs.cache-hit != 'true' | |
| run: | | |
| git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git | |
| source spack/share/spack/setup-env.sh | |
| sed "s/\[oneapi, gcc@10:10, apple-clang@14\]/\[oneapi\]/g" ufs_utils/ci/spack.yaml > spack_ci.yaml | |
| spack env create ufs_utils-env spack_ci.yaml | |
| spack env activate ufs_utils-env | |
| spack compiler find | |
| sudo apt install cmake | |
| spack external find | |
| spack config add "packages:all:prefer:'%oneapi'" | |
| spack config add "packages:mpi:require:intel-oneapi-mpi" | |
| intel_mpi_version=$(basename $(realpath /opt/intel/oneapi/mpi/latest)) | |
| sed -i "s|^ packages:| packages:\n intel-oneapi-mpi:\n buildable: false\n externals:\n - spec: intel-oneapi-mpi@${intel_mpi_version}\n prefix: /opt/intel/oneapi|" $SPACK_ENV/spack.yaml | |
| spack config add "packages:python:require:'@3.11'" | |
| cat $SPACK_ENV/spack.yaml | |
| spack concretize | |
| spack install --dirty --show-log-on-error --fail-fast | |
| spack clean --all | |
| ufs_utils: | |
| needs: setup | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: install-intel | |
| run: | | |
| echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile | |
| - name: checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| path: ufs_utils | |
| submodules: recursive | |
| - name: cache-env | |
| id: cache-env | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| spack | |
| ~/.spack | |
| /opt/intel | |
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ufs_utils/ci/spack.yaml') }} | |
| - name: build | |
| run: | | |
| source spack/share/spack/setup-env.sh | |
| spack env activate ufs_utils-env | |
| export CC=mpiicx | |
| export FC=mpiifx | |
| cd ufs_utils | |
| mkdir -p build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=../install .. | |
| make -j2 VERBOSE=1 | |
| make install | |
| - name: ctest | |
| run: | | |
| source spack/share/spack/setup-env.sh | |
| spack env activate ufs_utils-env | |
| cd ufs_utils | |
| cd build | |
| ctest --verbose --rerun-failed --output-on-failure |