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Publish NPM package for deployment #270

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Fixes #269

brainstorm and others added 30 commits October 11, 2024 16:25
% npm install $HOME/dev/umccr/htsget-rs/deploy/
npm error Invalid Version: 1.0
Removing unnecessary BAM symlinks under crypt4gh data.

Co-authored-by: Marko Malenic <mmalenic1@gmail.com>
fix(deploy): allow fetching C4GH and regular files
… one... this setting should probably be called 'usePreExistingHostedZone' I reckon?
% npm install $HOME/dev/umccr/htsget-rs/deploy/
npm error Invalid Version: 1.0
brainstorm and others added 21 commits October 22, 2024 12:47
% npm install $HOME/dev/umccr/htsget-rs/deploy/
npm error Invalid Version: 1.0
Removing unnecessary BAM symlinks under crypt4gh data.

Co-authored-by: Marko Malenic <mmalenic1@gmail.com>
… one... this setting should probably be called 'usePreExistingHostedZone' I reckon?
@brainstorm brainstorm marked this pull request as ready for review October 22, 2024 02:00
brainstorm and others added 8 commits October 28, 2024 11:56
… perhaps we should parametrise those secret manager paths if they are not already @mmalenic?
…the full non-functional refactoring route.

Co-authored-by: Marko Malenic <mmalenic1@gmail.com>
* Use package.json "files" directive to whitelist what to publish to npmjs.com.
* Comment examples on settings.js and cleanup to guide user with settings (especially cognito ones)
* Shipping example deploy config, needs to be migrated to stack directives and the following warnings must be addressed:

npm warn package-json htsget-lambda@0.5.1 No bin file found at bin/htsget-lambda.js
npm warn package-json htsget-lambda@0.5.1 No bin file found at bin/htsget-lambda.js
npm warn package-json htsget-lambda@0.5.1 No bin file found at bin/htsget-lambda.js
npm warn package-json htsget-lambda@0.5.1 No bin file found at bin/htsget-lambda.js
…construct, we'll eventually split this deploy folder into a separate repo
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feat: publish htsget deployment to NPM
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