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@garciagenrique
garciagenrique committed May 7, 2024
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158 changes: 79 additions & 79 deletions vre-singleuser-py311/Dockerfile
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FROM quay.io/jupyter/scipy-notebook:python-3.11.8
#FROM jupyter/scipy-notebook:python-3.10.11
#FROM quay.io/jupyter/scipy-notebook:python-3.11.8
FROM jupyter/scipy-notebook:python-3.10.11
LABEL author="Image based on the work by Muhammad Aditya Hilmy - ESCAPE WP2 2020"
LABEL maintainer="VRE Team @ CERN 22/23 - E. Garcia, E. Gazzarrini, D. Gosein"
LABEL org.opencontainers.image.source https://github.com/vre-hub/environments
Expand All @@ -22,83 +22,83 @@ RUN conda install -y -n base mamba \
&& conda clean --all -f -y

# Install rucio-jupyterlab version with jlab v=4
RUN git clone https://github.com/garciagenrique/jupyterlab-extension.git \
&& cd jupyterlab-extension \
&& git checkout ntbk_v6 \
&& pip install . \
&& cd .. \
&& jupyter server extension enable --py rucio_jupyterlab --sys-prefix
# && jupyter labextension link . --dev-build=False
# && jupyter lab clean -y

#RUN pip install --upgrade jupyterlab jupyterlab_server jupyter_server traitlets nbformat

RUN pip install swanoauthrenew==1.0.1 PyJWT \
&& jupyter server extension enable --py swanoauthrenew --sys-prefix \
&& pip install reana-client>=0.9.0 \
&& pip install ipykernel ipywidgets

#RUN pip install --upgrade jupyterlab-git
RUN pip install --upgrade jupyterlab_pygments
RUN pip install --upgrade jupyterlab_widgets

USER root

RUN apt update -y \
&& apt install -y build-essential curl voms-clients-java software-properties-common \
&& apt clean -y \
&& rm /opt/conda/bin/voms-proxy-init \
&& ln -s /usr/bin/voms-proxy-init /opt/conda/bin/voms-proxy-init

# ESCAPE grid-security and VOMS setup
RUN wget -q -O - https://dist.eugridpma.info/distribution/igtf/current/GPG-KEY-EUGridPMA-RPM-3 | apt-key add -

RUN apt update \
&& add-apt-repository 'deb http://repository.egi.eu/sw/production/cas/1/current egi-igtf core' \
&& apt -y install ca-policy-egi-core

RUN mkdir -p /etc/vomses \
&& wget https://indigo-iam.github.io/escape-docs/voms-config/voms-escape.cloud.cnaf.infn.it.vomses -O /etc/vomses/voms-escape.cloud.cnaf.infn.it.vomses \
&& mkdir -p /etc/grid-security/vomsdir/escape \
&& wget https://indigo-iam.github.io/escape-docs/voms-config/voms-escape.cloud.cnaf.infn.it.lsc -O /etc/grid-security/vomsdir/escape/voms-escape.cloud.cnaf.infn.it.lsc

# Setup merged CERN CA file on Ubuntu based images.
# This file is contained in the `CERN-bundle.pem` file downloaded using
RUN mkdir /certs \
&& touch /certs/rucio_ca.pem \
&& curl -fsSL 'https://cafiles.cern.ch/cafiles/certificates/CERN%20Root%20Certification%20Authority%202.crt' | openssl x509 -inform DER -out /tmp/cernrootca2.crt \
&& curl -fsSL 'https://cafiles.cern.ch/cafiles/certificates/CERN%20Grid%20Certification%20Authority(1).crt' -o /tmp/cerngridca.crt \
&& curl -fsSL 'https://cafiles.cern.ch/cafiles/certificates/CERN%20Certification%20Authority.crt' -o /tmp/cernca.crt \
&& cat /tmp/cernrootca2.crt >> /certs/rucio_ca.pem \
&& cat /tmp/cerngridca.crt >> /certs/rucio_ca.pem \
&& cat /tmp/cernca.crt >> /certs/rucio_ca.pem \
&& rm /tmp/*.crt \
&& update-ca-certificates

# Setup extension Rucio instance config
ADD vre_notebook_configuration.py /usr/local/bin/vre_notebook_configuration.py
ADD vre_notebook_configuration.sh /usr/local/bin/vre_notebook_configuration.sh
RUN fix-permissions /usr/local/bin/vre_notebook_configuration.sh \
&& sed -i -e 's/\r$/\n/' /usr/local/bin/vre_notebook_configuration.sh \
&& chmod +x /usr/local/bin/vre_notebook_configuration.sh

RUN fix-permissions $HOME/.jupyter
#RUN fix-permissions $HOME/.ipython/profile_default/
#RUN chmod -R $NB_UID $HOME/.ipython/profile_default
# && fix-permissions $HOME/.ipython/profile_default

RUN mkdir -p /opt/rucio \
&& chown -R $NB_UID /opt/rucio \
&& /usr/local/bin/vre_notebook_configuration.sh \
&& chown -R $NB_UID $HOME/.jupyter/jupyter_server_config.json
# This files have stopped to appar by default on jlab4
#&& chown -R $NB_UID /etc/jupyter/jupyter_notebook_config.py

ENV JUPYTER_ENABLE_LAB=yes
ENV IPYTHONDIR=/etc/ipython
ADD ipython_kernel_config.json $HOME/.ipython/profile_default/ipython_kernel_config.json
RUN chown -R $NB_UID $HOME/.ipython
#ENV JUPYTERHUB_SINGLEUSER_APP=jupyter-server
# RUN git clone https://github.com/garciagenrique/jupyterlab-extension.git \
# && cd jupyterlab-extension \
# && git checkout ntbk_v6 \
# && pip install . \
# && cd .. \
# && jupyter server extension enable --py rucio_jupyterlab --sys-prefix
# # && jupyter labextension link . --dev-build=False
# # && jupyter lab clean -y

# #RUN pip install --upgrade jupyterlab jupyterlab_server jupyter_server traitlets nbformat

# RUN pip install swanoauthrenew==1.0.1 PyJWT \
# && jupyter server extension enable --py swanoauthrenew --sys-prefix \
# && pip install reana-client>=0.9.0 \
# && pip install ipykernel ipywidgets

# #RUN pip install --upgrade jupyterlab-git
# RUN pip install --upgrade jupyterlab_pygments
# RUN pip install --upgrade jupyterlab_widgets

# USER root

# RUN apt update -y \
# && apt install -y build-essential curl voms-clients-java software-properties-common \
# && apt clean -y \
# && rm /opt/conda/bin/voms-proxy-init \
# && ln -s /usr/bin/voms-proxy-init /opt/conda/bin/voms-proxy-init

# # ESCAPE grid-security and VOMS setup
# RUN wget -q -O - https://dist.eugridpma.info/distribution/igtf/current/GPG-KEY-EUGridPMA-RPM-3 | apt-key add -

# RUN apt update \
# && add-apt-repository 'deb http://repository.egi.eu/sw/production/cas/1/current egi-igtf core' \
# && apt -y install ca-policy-egi-core

# RUN mkdir -p /etc/vomses \
# && wget https://indigo-iam.github.io/escape-docs/voms-config/voms-escape.cloud.cnaf.infn.it.vomses -O /etc/vomses/voms-escape.cloud.cnaf.infn.it.vomses \
# && mkdir -p /etc/grid-security/vomsdir/escape \
# && wget https://indigo-iam.github.io/escape-docs/voms-config/voms-escape.cloud.cnaf.infn.it.lsc -O /etc/grid-security/vomsdir/escape/voms-escape.cloud.cnaf.infn.it.lsc

# # Setup merged CERN CA file on Ubuntu based images.
# # This file is contained in the `CERN-bundle.pem` file downloaded using
# RUN mkdir /certs \
# && touch /certs/rucio_ca.pem \
# && curl -fsSL 'https://cafiles.cern.ch/cafiles/certificates/CERN%20Root%20Certification%20Authority%202.crt' | openssl x509 -inform DER -out /tmp/cernrootca2.crt \
# && curl -fsSL 'https://cafiles.cern.ch/cafiles/certificates/CERN%20Grid%20Certification%20Authority(1).crt' -o /tmp/cerngridca.crt \
# && curl -fsSL 'https://cafiles.cern.ch/cafiles/certificates/CERN%20Certification%20Authority.crt' -o /tmp/cernca.crt \
# && cat /tmp/cernrootca2.crt >> /certs/rucio_ca.pem \
# && cat /tmp/cerngridca.crt >> /certs/rucio_ca.pem \
# && cat /tmp/cernca.crt >> /certs/rucio_ca.pem \
# && rm /tmp/*.crt \
# && update-ca-certificates

# # Setup extension Rucio instance config
# ADD vre_notebook_configuration.py /usr/local/bin/vre_notebook_configuration.py
# ADD vre_notebook_configuration.sh /usr/local/bin/vre_notebook_configuration.sh
# RUN fix-permissions /usr/local/bin/vre_notebook_configuration.sh \
# && sed -i -e 's/\r$/\n/' /usr/local/bin/vre_notebook_configuration.sh \
# && chmod +x /usr/local/bin/vre_notebook_configuration.sh

# RUN fix-permissions $HOME/.jupyter
# #RUN fix-permissions $HOME/.ipython/profile_default/
# #RUN chmod -R $NB_UID $HOME/.ipython/profile_default
# # && fix-permissions $HOME/.ipython/profile_default

# RUN mkdir -p /opt/rucio \
# && chown -R $NB_UID /opt/rucio \
# && /usr/local/bin/vre_notebook_configuration.sh \
# && chown -R $NB_UID $HOME/.jupyter/jupyter_server_config.json
# # This files have stopped to appar by default on jlab4
# #&& chown -R $NB_UID /etc/jupyter/jupyter_notebook_config.py

# ENV JUPYTER_ENABLE_LAB=yes
# ENV IPYTHONDIR=/etc/ipython
# ADD ipython_kernel_config.json $HOME/.ipython/profile_default/ipython_kernel_config.json
# RUN chown -R $NB_UID $HOME/.ipython
# #ENV JUPYTERHUB_SINGLEUSER_APP=jupyter-server

WORKDIR $HOME
USER $NB_UID
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