Fix #69 - improve TSV import #84
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| name: Test-uk-live | |
| on: | |
| pull_request: | |
| push: | |
| branches: [main] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: DeLaGuardo/setup-clojure@master | |
| with: | |
| cli: latest | |
| - name: Set up JDK 17 | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'zulu' | |
| java-version: '17' | |
| - name: Cache Maven packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.m2 | |
| key: ${{ runner.os }}-m2-${{ hashFiles('**/deps.edn') }} | |
| restore-keys: ${{ runner.os }}-m2 | |
| - name: Install dependencies | |
| run: clojure -P -M:test | |
| - name: Compilation check | |
| run: clojure -M:dev:check | |
| - name: Create TRUD cache directory | |
| run: mkdir trud | |
| - name: Write out TRUD API key from secrets | |
| run: echo ${{ secrets.TRUD_API_KEY }} >> api-key.txt | |
| - name: Cache database | |
| id: cache-db | |
| uses: actions/cache@v4 | |
| with: | |
| path: snomed.db | |
| key: ${{ github.sha }}-uk-clinical-db | |
| - name: Install latest distributions for the UK | |
| if: steps.cache-db.outputs.cache-hit != 'true' | |
| run: clojure -M:run --db snomed.db install uk.nhs/sct-clinical --api-key api-key.txt --cache-dir trud | |
| - name: Remove downloaded files | |
| run: rm -rf trud | |
| - name: Index database | |
| if: steps.cache-db.outputs.cache-hit != 'true' | |
| run: clojure -M:run --db snomed.db index | |
| - name: Print status report | |
| run: clojure -M:run --db snomed.db status | |
| - name: Clojure tests | |
| run: clojure -M:test |