- @name: Generic Filter
- @version: 2020.01
- @authors: Marion Landi and Melanie Petera for first version - Maintainer: Melanie Petera (PFEM ; INRAE ; MetaboHUB)
- @init date: 2014, december
- @main usage: This tool allows to remove all samples and/or variables corresponding to specific values regarding designated factors or numerical variables.
This tool is provided as one of the Workflow4Metabolomics Galaxy instance utilities. W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data.
User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
- R software: version > 3.0.0 recommended
- Specific R library: 'batch'
- Use of this tool in a docker context: Information is provided in the about_docker.md file.
Main files:
- filter_script.R: R function (core script)
- filter_wrap.R: R script to link the main R function to inputs
- generic_filter.xml: XML wrapper (interface for Galaxy)
- Help and support: support@workflow4metabolomics.org
- Cea Cnrs Inria Logiciel Libre License, version 2.1 (CECILL-2.1)