Fix: Rename file with lower-case character

workflow4metabolomics · Nov 14, 2024 · c2ba93e · c2ba93e
1 parent 6c7f5fe
commit c2ba93e
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Showing 5 changed files with 9 additions and 9 deletions.
diff --git a/tools/metams/.shed.yml b/tools/metams/.shed.yml
@@ -19,15 +19,15 @@ repositories:
       Part of the W4M project : http://workflow4metabolomics.org Plotting of preprocessing data by metaMS.
     owner: workflow4metabolomics
     include:
-      [*default-includes, metaMS_plot.xml, metaMS_plot.r]
-  metams_runGC:
+      [*default-includes, metams_plot.xml, metams_plot.r]
+  metams_run_gc:
     description: '[Metabolomics][W4M][GC-MS] metaMS R Package - GC-MS data preprocessing using metaMS package'
     long_description: |
       Part of the W4M project: http://workflow4metabolomics.org 
       metaMS: https://www.bioconductor.org/packages/release/bioc/html/metaMS.html MS-based metabolomics data processing and compound annotation pipeline.
     owner: yguitton
     include:
-      [*default-includes, metams_runGC.xml, metams_runGC.r]
+      [*default-includes, metams_run_gc.xml, metams_run_gc.r]
 
 suite:
   name: suite_metams

diff --git a/tools/metams/metaMS_plot.r → tools/metams/metams_plot.r b/tools/metams/metaMS_plot.r → tools/metams/metams_plot.r
diff --git a/tools/metams/metaMS_plot.xml → tools/metams/metams_plot.xml b/tools/metams/metaMS_plot.xml → tools/metams/metams_plot.xml
@@ -1,4 +1,4 @@
- <tool id="metams_plot" name="metaMS.plot" version="0.1.0+metams@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0">
+ <tool id="metams_plot" name="metams.plot" version="0.1.0+metams@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0">
 
     <description>GC-MS data preprocessing using metaMS package</description>
 
@@ -11,11 +11,11 @@
     </expand>
 
     <required_files>
-        <include type="literal" path="metaMS_plot.r"/>
+        <include type="literal" path="metams_plot.r"/>
     </required_files>
 
     <command detect_errors="exit_code"><![CDATA[
-    @COMMAND_RSCRIPT@/metaMS_plot.r
+    @COMMAND_RSCRIPT@/metams_plot.r
         
         metaMS '$metaMS'
 

diff --git a/tools/metams/metaMS_runGC.r → tools/metams/metams_run_gc.r b/tools/metams/metaMS_runGC.r → tools/metams/metams_run_gc.r
diff --git a/tools/metams/metams_runGC.xml → tools/metams/metams_run_gc.xml b/tools/metams/metams_runGC.xml → tools/metams/metams_run_gc.xml
@@ -1,4 +1,4 @@
- <tool id="metams_runGC" name="metaMS.runGC" version="0.1.0+metams@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0">
+ <tool id="metams_run_gc" name="metams.runGC" version="0.1.0+metams@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0">
 
     <description>GC-MS data preprocessing using metaMS package</description>
 
@@ -9,11 +9,11 @@
     <expand macro="requirements"/>
 
     <required_files>
-        <include type="literal" path="metaMS_runGC.r"/>
+        <include type="literal" path="metams_run_gc.r"/>
     </required_files>
 
     <command detect_errors="exit_code"><![CDATA[
-    @COMMAND_RSCRIPT@//metaMS_runGC.r
+    @COMMAND_RSCRIPT@//metams_run_gc.r
 
         singlefile_galaxyPath '$input' 
         singlefile_sampleName '$input.name'