fix(gwe-esl): src/esl typo in mf6io guide (#2093) #1993
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name: MODFLOW 6 documentation | |
on: | |
push: | |
paths-ignore: | |
- '.github/workflows/release.yml' | |
- '.github/workflows/ci.yml' | |
- '.hpc/**' | |
pull_request: | |
branches: | |
- master | |
- develop | |
paths-ignore: | |
- '.github/workflows/release.yml' | |
- '.hpc/**' | |
env: | |
PIXI_BETA_WARNING_OFF: true | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
lint: | |
name: Check format | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout modflow6 | |
uses: actions/checkout@v4 | |
- uses: prefix-dev/setup-pixi@v0.8.1 | |
with: | |
pixi-version: v0.24.2 | |
- name: Check spelling | |
run: pixi run check-spelling | |
rtd_build: | |
name: Build ReadTheDocs | |
needs: | |
- lint | |
runs-on: ubuntu-22.04 | |
defaults: | |
run: | |
shell: bash -l {0} | |
env: | |
FC: gfortran | |
FC_V: 12 | |
steps: | |
- name: Checkout modflow6 | |
uses: actions/checkout@v4 | |
with: | |
path: modflow6 | |
- name: Checkout modflow6-examples | |
uses: actions/checkout@v4 | |
with: | |
repository: MODFLOW-USGS/modflow6-examples | |
path: modflow6-examples | |
- name: Checkout usgslatex | |
uses: actions/checkout@v4 | |
with: | |
repository: MODFLOW-USGS/usgslatex | |
path: usgslatex | |
- name: Setup pixi | |
uses: prefix-dev/setup-pixi@v0.8.1 | |
with: | |
pixi-version: v0.24.2 | |
manifest-path: "modflow6/pixi.toml" | |
- name: Custom pixi install | |
working-directory: modflow6 | |
run: pixi run install | |
- name: Print python package versions | |
working-directory: modflow6 | |
run: pixi run pip list | |
- name: Install TeX Live | |
run: | | |
sudo apt-get update | |
sudo apt install texlive-science \ | |
texlive-latex-extra \ | |
texlive-font-utils \ | |
texlive-fonts-recommended \ | |
texlive-fonts-extra | |
- name: Install USGS LaTeX style files and Univers font | |
working-directory: usgslatex/usgsLaTeX | |
run: sudo ./install.sh --all-users | |
- name: Build MF6IO files from DFNs | |
working-directory: modflow6 | |
run: pixi run run-mf6ivar | |
- name: Setup ${{ env.FC }} ${{ env.FC_V }} | |
uses: fortran-lang/setup-fortran@v1 | |
with: | |
compiler: gcc | |
version: ${{ env.FC_V }} | |
- name: Cache modflow6 examples | |
id: cache-examples | |
uses: actions/cache@v4 | |
with: | |
path: modflow6-examples/examples | |
key: modflow6-examples-${{ hashFiles('modflow6-examples/scripts/**') }} | |
- name: Install extra Python packages | |
if: steps.cache-examples.outputs.cache-hit != 'true' | |
working-directory: modflow6 | |
run: | | |
pixi run pip install -r ../modflow6-examples/etc/requirements.pip.txt | |
pixi run pip install -r ../modflow6-examples/etc/requirements.usgs.txt | |
- name: Update FloPy | |
if: steps.cache-examples.outputs.cache-hit != 'true' | |
working-directory: modflow6/autotest | |
run: pixi run update-flopy | |
# the example models also need mf2005, triangle and gridgen | |
- name: Install extra executables | |
if: steps.cache-examples.outputs.cache-hit != 'true' | |
uses: modflowpy/install-modflow-action@v1 | |
with: | |
subset: mf2005,triangle,gridgen | |
- name: Build example models | |
if: steps.cache-examples.outputs.cache-hit != 'true' | |
working-directory: modflow6 | |
shell: pixi run bash -e {0} | |
run: | | |
cd ../modflow6-examples/autotest | |
pytest -v -n auto test_scripts.py --init | |
ls -lh ../examples/ | |
- name: Run benchmarks | |
working-directory: modflow6 | |
run: pixi run benchmark | |
env: | |
GITHUB_TOKEN: ${{ github.token }} | |
- name: Show benchmarks | |
working-directory: modflow6/distribution | |
run: cat run-time-comparison.md | |
- name: Upload benchmarks | |
uses: actions/upload-artifact@v3 | |
with: | |
name: run-time-comparison | |
path: modflow6/distribution/run-time-comparison.md | |
- name: Collect deprecations | |
working-directory: modflow6 | |
run: pixi run deprecations | |
- name: Show deprecations | |
working-directory: modflow6/doc/mf6io/mf6ivar/md | |
run: cat deprecations.md | |
- name: Upload deprecations | |
uses: actions/upload-artifact@v3 | |
with: | |
name: deprecations | |
path: modflow6/doc/mf6io/mf6ivar/md/deprecations.md | |
- name: Run sphinx | |
working-directory: modflow6 | |
run: pixi run sphinx | |
- name: Upload RTD files | |
uses: actions/upload-artifact@v3 | |
with: | |
name: rtd-files-for-${{ github.sha }} | |
path: | | |
modflow6/.build_rtd_docs/dev.rst | |
modflow6/.build_rtd_docs/index.rst | |
modflow6/.build_rtd_docs/mf6io.rst | |
modflow6/.build_rtd_docs/_dev/ | |
modflow6/.build_rtd_docs/_mf6io/ | |
modflow6/.build_rtd_docs/_mf6run/ | |
modflow6/.build_rtd_docs/_static/ | |
- name: Build PDF documents | |
working-directory: modflow6 | |
run: pixi run build-docs | |
- name: Upload PDF documents | |
uses: actions/upload-artifact@v3 | |
with: | |
name: mf6io.pdf | |
path: | | |
modflow6/mf6io.pdf | |
modflow6/ReleaseNotes.pdf | |
modflow6/zonebudget.pdf | |
modflow6/converter_mf5to6.pdf | |
modflow6/mf6suptechinfo.pdf | |
modflow6/mf6examples.pdf | |
rtd_trigger: | |
name: rtd-trigger | |
needs: rtd_build | |
runs-on: ubuntu-22.04 | |
if: github.repository_owner == 'MODFLOW-USGS' && github.event_name == 'push' | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v4 | |
- name: Trigger RTDs build on push to repo branches | |
uses: dfm/rtds-action@v1 | |
with: | |
webhook_url: ${{ secrets.MF6_RTDS_WEBHOOK_URL }} | |
webhook_token: ${{ secrets.MF6_RTDS_WEBHOOK_TOKEN }} | |
commit_ref: ${{ github.ref }} | |
doxygen_build: | |
runs-on: ubuntu-22.04 | |
env: | |
working-directory: .build_rtd_docs | |
common-directory: .github/common | |
branch-name: ${GITHUB_REF##*/} | |
defaults: | |
run: | |
shell: bash | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Print branch name | |
run: echo ${{env.branch-name}} | |
- name: Install doxygen and graphviz | |
run: | | |
sudo apt-get update | |
sudo apt-get install doxygen graphviz | |
- name: Setup pixi | |
uses: prefix-dev/setup-pixi@v0.8.1 | |
with: | |
pixi-version: v0.24.2 | |
- name: Custom pixi install | |
run: pixi run install | |
- name: Print python package versions | |
run: pixi run pip list | |
- name: update MODFLOW 6 version | |
run: pixi run update-version | |
- name: run doxygen | |
run: doxygen | |
working-directory: ${{env.working-directory}} | |
- name: upload pages artifact | |
uses: actions/upload-pages-artifact@v2 | |
with: | |
path: ${{env.working-directory}}/html | |
pages_deploy: | |
if: github.ref == 'refs/heads/develop' && github.event_name == 'push' | |
needs: doxygen_build | |
permissions: | |
pages: write | |
id-token: write | |
environment: | |
name: github-pages | |
url: ${{ steps.deployment.outputs.page_url }} | |
runs-on: ubuntu-latest | |
steps: | |
- name: Deploy to GitHub Pages | |
id: deployment | |
uses: actions/deploy-pages@v3 |