fix test #2225
Workflow file for this run
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name: MODFLOW 6 continuous integration | |
on: | |
push: | |
paths-ignore: | |
- "**.md" | |
- "**.pdf" | |
- "**.tex" | |
- "**.jpg" | |
- "**.jpeg" | |
- "**.png" | |
- "**.bbl" | |
- "**.bib" | |
- "doc/**.dat" | |
- "doc/**.ipynb" | |
- "doc/**.py" | |
- "doc/**.sh" | |
- "doc/**.xlsx" | |
- ".hpc/**" | |
pull_request: | |
branches: | |
- master | |
- develop | |
paths-ignore: | |
- "**.md" | |
- "**.pdf" | |
- "**.tex" | |
- "**.jpg" | |
- "**.jpeg" | |
- "**.png" | |
- "**.bbl" | |
- "**.bib" | |
- "doc/**.dat" | |
- "doc/**.ipynb" | |
- "doc/**.py" | |
- "doc/**.sh" | |
- "doc/**.xlsx" | |
- ".hpc/**" | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
env: | |
PIXI_BETA_WARNING_OFF: true | |
jobs: | |
lint: | |
name: Check format | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout MF6 | |
uses: actions/checkout@v4 | |
- name: Setup pixi | |
uses: prefix-dev/setup-pixi@v0.8.1 | |
with: | |
pixi-version: v0.24.2 | |
- name: Check Fortran source formatting | |
run: pixi run check-format | |
- name: Check MSVS project files | |
run: pixi run check-vfproj | |
- name: Check python lint | |
run: pixi run check-python-lint | |
- name: Check python format | |
run: pixi run check-python-format | |
- name: Check CITATION.cff | |
uses: dieghernan/cff-validator@v3 | |
build: | |
name: Build | |
runs-on: ubuntu-22.04 | |
env: | |
FC: gfortran | |
FC_V: 13 | |
steps: | |
- name: Checkout MF6 | |
uses: actions/checkout@v4 | |
- name: Setup ${{ env.FC }} ${{ env.FC_V }} | |
uses: fortran-lang/setup-fortran@v1 | |
with: | |
compiler: gcc | |
version: ${{ env.FC_V }} | |
- name: Setup pixi | |
uses: prefix-dev/setup-pixi@v0.8.1 | |
with: | |
pixi-version: v0.24.2 | |
- name: Setup MF6 | |
run: pixi run setup -Dwerror=true builddir | |
- name: Build MF6 | |
run: pixi run build builddir | |
- name: Show build log | |
if: failure() | |
run: cat builddir/meson-logs/meson-log.txt | |
- name: Unit test MF6 | |
run: pixi run test builddir | |
smoke_test: | |
name: Smoke test | |
runs-on: ubuntu-22.04 | |
defaults: | |
run: | |
shell: bash | |
env: | |
FC: gfortran | |
FC_V: 13 | |
steps: | |
- name: Checkout MF6 | |
uses: actions/checkout@v4 | |
with: | |
path: modflow6 | |
- name: Checkout test-drive | |
uses: actions/checkout@v4 | |
with: | |
repository: fortran-lang/test-drive | |
path: test-drive | |
- name: Setup ${{ env.FC }} ${{ env.FC_V }} | |
uses: fortran-lang/setup-fortran@v1 | |
with: | |
compiler: gcc | |
version: ${{ env.FC_V }} | |
- name: Setup pixi | |
uses: prefix-dev/setup-pixi@v0.8.1 | |
with: | |
pixi-version: v0.24.2 | |
manifest-path: "modflow6/pixi.toml" | |
- name: Custom pixi install | |
working-directory: modflow6 | |
run: pixi run install | |
- name: Build test-drive | |
working-directory: test-drive | |
run: | | |
pixi run --manifest-path=../modflow6/pixi.toml meson setup builddir --prefix=$(pwd) --libdir=lib | |
pixi run --manifest-path=../modflow6/pixi.toml meson install -C builddir | |
echo "PKG_CONFIG_PATH=$(pwd)/lib/pkgconfig:$PKG_CONFIG_PATH" >> $GITHUB_ENV | |
- name: Build MF6 | |
working-directory: modflow6 | |
run: | | |
pixi run setup builddir | |
pixi run build builddir | |
- name: Show build log | |
if: failure() | |
working-directory: modflow6 | |
run: cat builddir/meson-logs/meson-log.txt | |
- name: Unit test MF6 | |
working-directory: modflow6 | |
run: pixi run test builddir | |
- name: Update flopy | |
working-directory: modflow6 | |
run: pixi run update-flopy | |
- name: Get executables | |
working-directory: modflow6 | |
env: | |
GITHUB_TOKEN: ${{ github.token }} | |
run: pixi run get-exes | |
- name: Test MF6 | |
working-directory: modflow6 | |
run: | | |
if [ "${{ github.ref_name }}" == "master" ]; then | |
pixi run autotest -m "not slow and not regression and not developmode" | |
else | |
pixi run autotest --smoke | |
fi | |
- name: Upload failed test output | |
if: failure() | |
uses: actions/upload-artifact@v4 | |
with: | |
name: failed-smoke-${{ runner.os }}-${{ env.FC }}-${{ env.FC_V }} | |
path: modflow6/autotest/.failed | |
test_gfortran: | |
name: Test GNU fortran | |
needs: | |
- lint | |
- build | |
- smoke_test | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
include: | |
# intel mac, release mode | |
- os: macos-13 | |
debug: false | |
# arm mac, release mode | |
- os: macos-14 | |
debug: false | |
# arm mac, debug mode | |
- os: macos-14 | |
debug: true | |
# ubuntu, release mode | |
- os: ubuntu-22.04 | |
debug: false | |
# ubuntu, debug mode | |
- os: ubuntu-22.04 | |
debug: true | |
# windows, release mode | |
- os: windows-2022 | |
debug: false | |
defaults: | |
run: | |
shell: bash | |
env: | |
FC: gfortran | |
FC_V: 13 | |
steps: | |
- name: Checkout MF6 | |
uses: actions/checkout@v4 | |
with: | |
path: modflow6 | |
- name: Checkout test models | |
uses: actions/checkout@v4 | |
with: | |
repository: MODFLOW-USGS/modflow6-testmodels | |
path: modflow6-testmodels | |
- name: Checkout examples | |
uses: actions/checkout@v4 | |
with: | |
repository: MODFLOW-USGS/modflow6-examples | |
path: modflow6-examples | |
- name: Setup ${{ env.FC }} ${{ env.FC_V }} | |
uses: fortran-lang/setup-fortran@v1 | |
with: | |
compiler: gcc | |
version: ${{ env.FC_V }} | |
- name: Setup pixi | |
uses: prefix-dev/setup-pixi@v0.8.1 | |
with: | |
pixi-version: v0.24.2 | |
manifest-path: "modflow6/pixi.toml" | |
- name: Custom pixi install | |
working-directory: modflow6 | |
run: pixi run install | |
- name: Set LDFLAGS (macOS) | |
if: runner.os == 'macOS' | |
run: | | |
os_ver=$(sw_vers -productVersion | cut -d'.' -f1) | |
if (( "$os_ver" > 12 )); then | |
ldflags="$LDFLAGS -Wl,-ld_classic" | |
echo "LDFLAGS=$ldflags" >> $GITHUB_ENV | |
fi | |
- name: Build MF6 | |
working-directory: modflow6 | |
run: | | |
setupargs="" | |
if [[ "${{ matrix.debug }}" == "true" ]]; then | |
setupargs="-Ddebug=true -Doptimization=0" | |
elif [[ "${{ matrix.os }}" == "macos-14" ]]; then | |
setupargs="-Doptimization=1" | |
fi | |
pixi run setup builddir $setupargs | |
pixi run build builddir | |
- name: Show build log | |
if: failure() | |
working-directory: modflow6 | |
run: cat builddir/meson-logs/meson-log.txt | |
- name: Unit test MF6 | |
working-directory: modflow6 | |
run: pixi run test builddir | |
- name: Update flopy | |
working-directory: modflow6 | |
run: pixi run update-flopy | |
- name: Get executables | |
working-directory: modflow6/autotest | |
env: | |
GITHUB_TOKEN: ${{ github.token }} | |
run: pixi run get-exes | |
- name: Test MF6 | |
working-directory: modflow6 | |
env: | |
REPOS_PATH: ${{ github.workspace }} | |
run: | | |
markers="" | |
if [[ "${{ github.ref_name }}" == "master" ]]; then | |
markers="not large and not developmode" | |
else | |
markers="not large" | |
fi | |
filters="" | |
if [[ "${{ matrix.os }}" == "macos-14" ]]; then | |
# comparison fails on macos-14 with optimization=1 | |
filters="not test028_sfr_rewet" | |
fi | |
pixi run autotest -m "$markers" -k "$filters" | |
- name: Install executables | |
if: runner.os == 'Linux' | |
uses: modflowpy/install-modflow-action@v1 | |
- name: Test examples | |
if: runner.os == 'Linux' | |
working-directory: modflow6 | |
shell: pixi run bash -e {0} | |
run: | | |
cp bin/mf6 ~/.local/bin/modflow/ | |
cp bin/libmf6.so ~/.local/bin/modflow/ | |
cd ../modflow6-examples/autotest | |
pytest -v -n auto test_scripts.py | |
- name: Upload failed test output | |
if: failure() | |
uses: actions/upload-artifact@v4 | |
with: | |
name: failed-${{ matrix.os }}-${{ env.FC }}-${{ env.FC_V }} | |
path: modflow6/autotest/.failed | |
- name: Checkout usgslatex | |
if: runner.os == 'Linux' | |
uses: actions/checkout@v4 | |
with: | |
repository: MODFLOW-USGS/usgslatex | |
path: usgslatex | |
- name: Install TeX Live | |
if: runner.os == 'Linux' | |
run: | | |
sudo apt-get update | |
sudo apt install texlive-science \ | |
texlive-latex-extra \ | |
texlive-font-utils \ | |
texlive-fonts-recommended \ | |
texlive-fonts-extra | |
- name: Install USGS LaTeX style files and Univers font | |
if: runner.os == 'Linux' | |
working-directory: usgslatex/usgsLaTeX | |
run: sudo ./install.sh --all-users | |
- name: Test distribution scripts | |
working-directory: modflow6 | |
env: | |
GITHUB_TOKEN: ${{ github.token }} | |
run: pixi run test-dist-scripts | |
test_intel_fortran: | |
name: Test Intel fortran | |
needs: | |
- lint | |
- build | |
- smoke_test | |
runs-on: ${{ matrix.os }} | |
env: | |
FC: intel-classic | |
FC_V: "2021.7" | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-22.04, macos-13, windows-2022] | |
defaults: | |
run: | |
shell: bash | |
steps: | |
- name: Free disk space (Ubuntu) | |
if: runner.os == 'Linux' | |
uses: jlumbroso/free-disk-space@main | |
with: | |
tool-cache: true | |
android: true | |
dotnet: true | |
haskell: true | |
large-packages: true | |
docker-images: true | |
swap-storage: true | |
- name: Checkout MF6 | |
uses: actions/checkout@v4 | |
with: | |
path: modflow6 | |
- name: Checkout test models | |
uses: actions/checkout@v4 | |
with: | |
repository: MODFLOW-USGS/modflow6-testmodels | |
path: modflow6-testmodels | |
- name: Checkout examples | |
uses: actions/checkout@v4 | |
with: | |
repository: MODFLOW-USGS/modflow6-examples | |
path: modflow6-examples | |
- name: Setup pixi | |
uses: prefix-dev/setup-pixi@v0.8.1 | |
with: | |
pixi-version: v0.24.2 | |
manifest-path: "modflow6/pixi.toml" | |
- name: Custom pixi install | |
working-directory: modflow6 | |
run: pixi run install | |
- name: Setup ${{ env.FC }} ${{ env.FC_V }} | |
uses: fortran-lang/setup-fortran@v1 | |
with: | |
compiler: ${{ env.FC }} | |
version: ${{ env.FC_V }} | |
- name: Update version files | |
working-directory: modflow6 | |
run: pixi run update-version | |
- name: Build MF6 | |
working-directory: modflow6 | |
run: | | |
pixi run setup builddir | |
pixi run build builddir | |
- name: Show build log | |
if: failure() | |
working-directory: modflow6 | |
run: cat builddir/meson-logs/meson-log.txt | |
- name: Unit test MF6 | |
working-directory: modflow6 | |
run: pixi run test builddir | |
- name: Update flopy | |
working-directory: modflow6 | |
run: pixi run update-flopy | |
- name: Get executables | |
working-directory: modflow6 | |
env: | |
GITHUB_TOKEN: ${{ github.token }} | |
run: pixi run get-exes | |
- name: Test MF6 | |
working-directory: modflow6 | |
env: | |
REPOS_PATH: ${{ github.workspace }} | |
run: | | |
if [ "${{ github.ref_name }}" == "master" ]; then | |
pixi run autotest -m "not large and not developmode" | |
else | |
pixi run autotest -m "not large" | |
fi | |
- name: Install executables | |
if: runner.os == 'Linux' | |
uses: modflowpy/install-modflow-action@v1 | |
- name: Test examples | |
if: runner.os == 'Linux' | |
working-directory: modflow6 | |
shell: pixi run bash -e {0} | |
run: | | |
cp bin/mf6 ~/.local/bin/modflow/ | |
cp bin/libmf6.so ~/.local/bin/modflow/ | |
cd ../modflow6-examples/autotest | |
pytest -v -n auto test_scripts.py | |
- name: Upload failed test output | |
if: failure() | |
uses: actions/upload-artifact@v4 | |
with: | |
name: failed-${{ matrix.os }}-${{ env.FC }}-${{ env.FC_V }} | |
path: modflow6/autotest/.failed | |
- name: Test scripts | |
working-directory: modflow6 | |
env: | |
GITHUB_TOKEN: ${{ github.token }} | |
run: pixi run test-dist-scripts | |
extended_test: | |
name: Extended testing | |
needs: | |
- lint | |
- build | |
- smoke_test | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-22.04, macos-13, windows-2022] | |
defaults: | |
run: | |
shell: bash | |
steps: | |
- name: Checkout MF6 | |
uses: actions/checkout@v4 | |
with: | |
path: modflow6 | |
- name: Setup pixi | |
uses: prefix-dev/setup-pixi@v0.8.1 | |
with: | |
pixi-version: v0.24.2 | |
manifest-path: "modflow6/pixi.toml" | |
- name: Custom pixi install | |
working-directory: modflow6 | |
run: pixi run install | |
- name: Install additional netcdf testing packages | |
working-directory: modflow6 | |
run: pixi run pip install xugrid xarray netcdf4 | |
- name: Set LDFLAGS (macOS) | |
if: matrix.os == 'macos-13' | |
run: | | |
os_ver=$(sw_vers -productVersion | cut -d'.' -f1) | |
if (( "$os_ver" > 12 )); then | |
ldflags="$LDFLAGS -Wl,-ld_classic" | |
echo "LDFLAGS=$ldflags" >> $GITHUB_ENV | |
fi | |
- name: Test extended MF6 | |
if: runner.os != 'Windows' | |
uses: ./modflow6/.github/actions/test-extended | |
- name: Test extended MF6 | |
if: runner.os == 'Windows' | |
uses: ./modflow6/.github/actions/test-extended-win | |
- name: Upload failed test output | |
if: failure() | |
uses: actions/upload-artifact@v4 | |
with: | |
name: failed-${{ matrix.os }} | |
path: modflow6/autotest/.failed |