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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 15

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 9 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 14

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 3

  6. genotyping genotyping Public

    Components of the WTSI genotype analysis pipeline.

    Perl 5 6

Repositories

Showing 10 of 80 repositories
  • valet Public

    Automated data mangement for Oxford Nanopore DNA sequencing instruments

    wtsi-npg/valet’s past year of commit activity
    Go 2 GPL-3.0 4 4 2 Updated Dec 23, 2024
  • sqyrrl Public

    Sqyrrl - an HTTP server for files hosted in iRODS

    wtsi-npg/sqyrrl’s past year of commit activity
    Go 0 GPL-3.0 4 2 2 Updated Dec 23, 2024
  • partisan Public

    A Python client API for iRODS

    wtsi-npg/partisan’s past year of commit activity
    Python 1 GPL-3.0 4 1 1 Updated Dec 23, 2024
  • extendo Public

    An extension to baton providing a Go API for iRODS (Integrated Rule-Oriented Data System)

    wtsi-npg/extendo’s past year of commit activity
    Go 0 GPL-3.0 2 0 1 Updated Dec 20, 2024
  • npg_langqc Public
    wtsi-npg/npg_langqc’s past year of commit activity
    Python 0 GPL-3.0 5 2 1 Updated Dec 20, 2024
  • npg_notifications Public
    wtsi-npg/npg_notifications’s past year of commit activity
    Python 0 4 1 1 Updated Dec 20, 2024
  • npg_porch_cli Public

    A command-line client to enable communication with the npg_porch API.

    wtsi-npg/npg_porch_cli’s past year of commit activity
    Python 0 4 0 0 Updated Dec 19, 2024
  • ml_warehouse Public

    Perl DBIx binding to a warehouse housing data from multiple LIM systems

    wtsi-npg/ml_warehouse’s past year of commit activity
    Perl 3 14 1 1 Updated Dec 18, 2024
  • npg_irods Public

    Tools for managing HTS (BAM and CRAM) format files in iRODS.

    wtsi-npg/npg_irods’s past year of commit activity
    Perl 2 GPL-3.0 17 17 2 Updated Dec 18, 2024
  • npg_tracking Public

    WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking

    wtsi-npg/npg_tracking’s past year of commit activity
    Perl 3 19 12 1 Updated Dec 18, 2024
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