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zhangrengang committed Apr 24, 2024
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4. It may not work for mesopolyploids, and not work for paleopolyploids, of which subgenome-specific TEs have been eliminated. However, the genetic boundary is not very clear.
5. Other unknown cases can be reported to me.

When it do not work, you may try another [pipeline](https://github.com/zhangrengang/subgenome_phasing_example) based on evidence of synteny, orthology and phylogeny.
When it do not work, you may try another [pipeline](https://github.com/zhangrengang/subgenome_phasing_example#subgenome-phasing-with-wgdi)
based on multiple evidence of synteny, orthology and phylogeny.

### Citation ###
If you use `SubPhaser`, please cite:
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