add more scientificData information

zhou-ran · Oct 20, 2020 · de9c839 · de9c839
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diff --git a/ScientificData/README.md b/ScientificData/README.md
@@ -1 +1,6 @@
-including all analysis script for xxxx.
+## Scientific data
+
+All procudure used for preparing figures and tables for Scientific Data.
+
+
+Not update again.
diff --git a/ScientificData/final/Lineage_gene.merge.pdf b/ScientificData/final/Lineage_gene.merge.pdf
diff --git a/ScientificData/final/Lineage_gene.pdf b/ScientificData/final/Lineage_gene.pdf
diff --git a/ScientificData/final/Lineage_gene.single.pdf b/ScientificData/final/Lineage_gene.single.pdf
diff --git a/ScientificData/final/annotation_distribution.pdf b/ScientificData/final/annotation_distribution.pdf
diff --git a/ScientificData/final/cooks_dis.pdf b/ScientificData/final/cooks_dis.pdf
diff --git a/ScientificData/final/distance.pdf b/ScientificData/final/distance.pdf
diff --git a/ScientificData/final/genebody_cov.pdf b/ScientificData/final/genebody_cov.pdf
diff --git a/ScientificData/final/pca_plot.pdf b/ScientificData/final/pca_plot.pdf
diff --git a/ScientificData/final/qual_boxplot.pdf b/ScientificData/final/qual_boxplot.pdf
diff --git a/ScientificData/final/stage_go.pdf b/ScientificData/final/stage_go.pdf
diff --git a/ScientificData/final/stage_kegg.pdf b/ScientificData/final/stage_kegg.pdf
diff --git a/ScientificData/final/stage_specific_gene.pdf b/ScientificData/final/stage_specific_gene.pdf
diff --git a/ScientificData/final/star_df_use.tsv b/ScientificData/final/star_df_use.tsv
@@ -0,0 +1,21 @@
+Sample	total_reads	clean_rate	clean_reads	uniquely_mapped_percent	avg_mapped_read_length	GC	cell_purity	RIN	TIN	genotype	stage	q30	TIN_mean	TIN_median	TIN_stdev
+A1C1	21.4	0.902	19.3	86.8	295.37	43	NA	NA	NA	Control	E15.5	90.6584135951479	47.8885092728166	50.6351015398378	23.9233033159726
+A2C1	25.5	0.847	21.6	88.46	294.78	44	NA	NA	NA	Control	E15.5	90.6885279594014	48.5400971652644	51.7823930264198	24.2225548370295
+A4C1	20.1	0.894	18	89.67	295.15	45	NA	NA	NA	Control	E15.5	90.5265563439178	48.7865654822321	51.8460909254858	23.9177795295239
+B1C1	31.9	0.893	28.5	86.41	295.46	42	NA	NA	NA	Control	E17.5	91.2376189651554	44.2369091086561	45.3876104981245	24.4893917738356
+B2C1	29.1	0.903	26.3	86.08	295.46	42	NA	NA	NA	Control	E17.5	90.8849132362009	44.6587235311181	45.9189048537641	24.8314111948169
+B3C1	20.6	0.861	17.7	83.47	293.53	42.5	NA	NA	NA	Control	E17.5	88.4439861972821	48.2764071115117	50.837521815128	24.7973104841702
+B4C1	17.3	0.91	15.7	83.81	295.53	42	NA	NA	NA	Control	E17.5	90.7736729479745	44.2195436441439	45.4816997809394	24.5413368569282
+B6C1	27.8	0.899	25	86.57	295.08	44	NA	NA	NA	Control	E17.5	90.8197473782062	46.5725171026274	48.9941162031548	24.9727941884963
+B7C1_2	25.2	0.91	22.9	84.36	295.56	42.5	NA	NA	NA	Control	E17.5	92.9326281259477	47.1518095578867	49.3584955686479	24.3567078110321
+C2C1	17	0.852	14.5	82.34	294.51	41	NA	NA	NA	Control	P1.5	91.3330167754469	38.1346933657001	36.0114549958577	25.3487787969169
+C4C1	15.9	0.872	13.9	82.76	294.51	41	NA	NA	NA	Control	P1.5	91.152526659936	37.7495942563529	34.9163376331979	25.8804480087451
+C5C1	37.2	0.893	33.2	86.2	295.54	42	NA	NA	NA	Control	P1.5	92.381737437832	42.2028516493354	41.6785435266025	24.5514773692313
+C6C1	21.9	0.877	19.2	82.43	293.55	43	NA	NA	NA	Control	P1.5	89.5831624395753	46.3724397183887	48.2169158643067	25.8509160261691
+D11C1	46.1	0.971	44.7	90.02	298.13	42	NA	NA	NA	Control	P8	94.8396386619244	34.3334251202614	32.2090692206274	23.9598998060001
+D12C1	47.6	0.959	45.6	86.61	298.3	40	NA	NA	NA	Control	P8	95.4217441643265	30.057964608768	24.9807638592969	23.7459340678083
+D13C1	46.9	0.961	45.1	86.04	298.35	40	NA	NA	NA	Control	P8	95.4978473220523	31.1115075877278	26.480874024646	23.5099324282028
+D14C2	45.6	0.971	44.3	91.77	298.29	42	NA	NA	NA	Control	P8	94.9702921642272	34.7506483090064	33.1983273201858	23.7225957667793
+E1C1	34.6	0.911	31.5	89.7	295.36	44	NA	NA	NA	Control	P60	90.8086926755055	47.7734244670909	51.0973994670287	25.0479516228306
+E2C1	28	0.938	26.3	89.59	296.78	44	NA	NA	NA	Control	P60	91.3986056600783	49.7408507709954	53.1163925324921	23.2172297199476
+E4C1	17.6	0.83	14.6	84.71	291.35	43	NA	NA	NA	Control	P60	86.6133675225809	51.4679214669688	55.2561763841535	25.0498956423207