build based on 3d156d9

previews/PR141/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-03-15T11:29:58","documenter_version":"1.3.0"}}
+{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-03-15T15:11:16","documenter_version":"1.3.0"}}

previews/PR141/checklist/index.html

@@ -20,4 +20,4 @@
 
    Either of those should automatically publish a new version to the Julia registry.
  - Once registered, the `TagBot.yml` workflow should create a tag, and rebuild the documentation for this tag.
- - These steps can take quite a bit of time (1 hour or more), so don&#39;t be surprised if the new documentation takes a while to appear.</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../contributing/">« Contributing</a><a class="docs-footer-nextpage" href="../lib/internals/">Internals »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Friday 15 March 2024 11:29">Friday 15 March 2024</span>. Using Julia version 1.10.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+ - These steps can take quite a bit of time (1 hour or more), so don&#39;t be surprised if the new documentation takes a while to appear.</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../contributing/">« Contributing</a><a class="docs-footer-nextpage" href="../lib/internals/">Internals »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Friday 15 March 2024 15:11">Friday 15 March 2024</span>. Using Julia version 1.10.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

previews/PR141/examples/getting_started.jl

@@ -28,6 +28,7 @@ begin
     using DataFramesMeta
     using LinearAlgebra
     using Transducers
+    using ReverseDiff
 end
 
 # ╔═╡ 3ebc8384-f73d-4597-83a7-07a3744fed61
@@ -97,7 +98,7 @@ Z_0 &\sim \mathcal{N}(0,1),\\
 # ╔═╡ 56ae496b-0094-460b-89cb-526627991717
 rwp = EpiAware.RandomWalk(
     init_prior = Normal(),
-    std_prior = EpiAware._make_halfnormal_prior(0.1))
+    std_prior = EpiAware.EpiLatentModels._make_halfnormal_prior(0.1))
 
 # ╔═╡ 767beffd-1ef5-4e6c-9ac6-edb52e60fb44
 md"
@@ -139,6 +140,12 @@ And construct the `EpiModel`.
 # ╔═╡ 6fbdd8e6-2323-4352-9185-1f31a9cf9012
 epi_model = DirectInfections(model_data, log_I0_prior)
 
+# ╔═╡ 10c750db-6d00-4ef6-9caa-3cf7b3c0d711
+latent = generate_latent_infs(epi_model, 20)
+
+# ╔═╡ 45b287b8-22b5-4f09-9a93-51df82477b01
+rand(latent)
+
 # ╔═╡ 5e62a50a-71f4-4902-b1c9-fdf51fe145fa
 md"
 
@@ -177,10 +184,10 @@ We choose a simple observation model where infections are observed 0, 1, 2, 3 da
 "
 
 # ╔═╡ 448669bc-99f4-4823-b15e-fcc9040ba31b
-obs_model = EpiAware.DelayObservations(
+obs_model = DelayObservations(
     fill(0.25, 4),
     time_horizon,
-    EpiAware._make_halfnormal_prior(0.1)
+    EpiAware.EpiLatentModels._make_halfnormal_prior(0.1)
 )
 
 # ╔═╡ e49713e8-4840-4083-8e3f-fc52d791be7b
@@ -427,6 +434,8 @@ end
 # ╠═6639e66f-7725-4976-81b2-6472419d1a62
 # ╟─df5e59f8-3185-4bed-9cca-7c266df17cec
 # ╠═6fbdd8e6-2323-4352-9185-1f31a9cf9012
+# ╠═10c750db-6d00-4ef6-9caa-3cf7b3c0d711
+# ╠═45b287b8-22b5-4f09-9a93-51df82477b01
 # ╟─5e62a50a-71f4-4902-b1c9-fdf51fe145fa
 # ╟─e813d547-6100-4c43-b84c-8cebe306bda8
 # ╠═c7580ae6-0db5-448e-8b20-4dd6fcdb1ae0