Merge pull request #19 from CDCgov/add-testing-ci

Add testing of EpiAware to CI
CDCgov · Feb 12, 2024 · 7362a2e · 7362a2e
2 parents 3de1188 + 20c8f22
commit 7362a2e
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Showing 7 changed files with 1,400 additions and 10 deletions.
diff --git a/.github/actions/install-julia/action.yaml b/.github/actions/install-julia/action.yaml
@@ -16,17 +16,22 @@ runs:
         key: julia-binary-${{ inputs.version }}
         restore-keys: |
           julia-binary-${{ inputs.version }}
+
     - name: Install Julia
       if: steps.cache-julia.outputs.cache-hit != 'true'
       run: |
         mkdir -p ~/julia
         version=$(echo ${{ inputs.version }} | cut -d. -f1,2)
         wget https://julialang-s3.julialang.org/bin/linux/x64/$version/julia-${{ inputs.version }}-linux-x86_64.tar.gz -O ~/julia/julia.tar.gz
       shell: bash
-    - run: tar -xzf ~/julia/julia.tar.gz -C ~/julia --strip-components=1
+
+    - name: Unzip Julia
+      run: tar -xzf ~/julia/julia.tar.gz -C ~/julia --strip-components=1
       shell: bash
+
     - run: echo "$HOME/julia/bin" >> $GITHUB_PATH
       shell: bash
+
     - uses: actions/cache@v3
       with:
         path: |

diff --git a/.github/workflows/test-EpiAware.yaml b/.github/workflows/test-EpiAware.yaml
@@ -0,0 +1,17 @@
+name: Test EpiAware
+
+on:
+  pull_request:
+  push:
+    branches: [main]
+
+jobs:
+  test-EpiAware:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+    - uses: ./.github/actions/install-julia
+      with:
+        version: '1.10.0'
+    - name: Run unit tests for EpiAware
+      run: julia --project=EpiAware -e 'using Pkg; Pkg.test()'
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -25,4 +25,4 @@ repos:
     hooks:
     -   id: detect-secrets
         args: ['--baseline', '.secrets.baseline']
-        exclude: EpiAware/Manifest.toml
+        exclude: '.*/Manifest\.toml$'
diff --git a/EpiAware/Manifest.toml b/EpiAware/Manifest.toml
@@ -2,7 +2,7 @@
 
 julia_version = "1.10.0"
 manifest_format = "2.0"
-project_hash = "994dd97f3407acb923def45029b96a36ab4b1ffe"
+project_hash = "b4d488971893c2da3a7e5ee0a7a6da358a2c3ba6"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245"

diff --git a/EpiAware/Project.toml b/EpiAware/Project.toml
@@ -5,7 +5,6 @@ version = "0.1.0-DEV"
 
 [deps]
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
-DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
 Optim = "429524aa-4258-5aef-a3af-852621145aeb"
@@ -19,9 +18,3 @@ Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
 
 [compat]
 julia = "1.9,1.10"
-
-[extras]
-Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-
-[targets]
-test = ["Test"]