Issue 251: Add aggregation functionality #397
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## main #397 +/- ##
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+ Coverage 93.33% 93.57% +0.23%
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Files 53 54 +1
Lines 540 560 +20
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+ Hits 504 524 +20
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SamuelBrand1
previously approved these changes
Jul 25, 2024
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This looks good, but I think we can modify the implementation abit e.g. I think we unnecessarily map over too many indices to then slice into specific bits of the array etc.
Also, I noted when trying out the unit tests locally that even with PoissonError as the underlying obs error model the output was returning Float64 eltype. I'm happy to make that an issue and move on, but its not what I expected (should I be expecting something else?).
Co-authored-by: Samuel Brand <48288458+SamuelBrand1@users.noreply.github.com>
Co-authored-by: Samuel Brand <48288458+SamuelBrand1@users.noreply.github.com>
seabbs
commented
Jul 25, 2024
seabbs
commented
Jul 25, 2024
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Nice review. I've updated the output to be based on the type of expected obs so I should it should match your expectations now. Just a few open issues to discuss left I think.
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SamuelBrand1
previously approved these changes
Jul 25, 2024
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This PR closes #251 by adding a new
Aggregatestruct which sums expected observations based on a supplied aggregation vector (which is first broadcast to the full length). This is similar to the handling of daily -> weekly reporting inEpiNow2but more flexible and might be of interest to @jessalynnsebastian (though I think it isn't what we would want whenEpiAwaresupports broadcasting expected observations to a reporting triangle.This PR also showcases the new move (in #392) to manipulate the length of passed vectors.