bump phdi version to 1.1.2 (#328)

scripts/Synapse/analyzeLinkageAlgorithms.ipynb

@@ -17,6 +17,15 @@
         "Part 4 generates the final result statistics of the performance of each algorithm on the testing set."
       ]
     },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {},
+      "outputs": [],
+      "source": [
+        "%pip install --upgrade pip"
+      ]
+    },
     {
       "cell_type": "code",
       "execution_count": null,

scripts/Synapse/convertParquetMPI.ipynb

@@ -10,6 +10,15 @@
         "This notebook reads in patient data from an uploaded parquet file (`mpi_incoming_filename`), converts to FHIR, and writes the data to blob storage."
       ]
     },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {},
+      "outputs": [],
+      "source": [
+        "%pip install --upgrade pip"
+      ]
+    },
     {
       "cell_type": "code",
       "execution_count": null,

scripts/Synapse/generateIRISCaseFiles.ipynb

@@ -17,6 +17,15 @@
         "Both .txt files conform to the LAC UDF upload spec with two rows per ECR and 2 recent COVID tests from the 20 tests stored in the ECR datastore."
       ]
     },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {},
+      "outputs": [],
+      "source": [
+        "%pip install --upgrade pip"
+      ]
+    },
     {
       "cell_type": "code",
       "execution_count": null,

scripts/Synapse/updateECRDataStore.ipynb

@@ -10,6 +10,15 @@
     "This notebook updates the ECR datastore delta table with new ECR records (`PARSED_ECR_PATH`); a new ECR datastore delta table is created if one does not already exist."
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "%pip install --upgrade pip"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,

scripts/Synapse/updateECRDataStoreIncidentID.ipynb

@@ -19,6 +19,15 @@
         "Set up and prep data. Load ECR datastore (`ecr`) and MII delta tables (`mii`). Load the data necessary for identifying positive COVID tests (`covid_test_type_codes`, `covid_positive_results`)"
       ]
     },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {},
+      "outputs": [],
+      "source": [
+        "%pip install --upgrade pip"
+      ]
+    },
     {
       "cell_type": "code",
       "execution_count": null,

scripts/Synapse/updateECRDataStoreIrisID.ipynb

@@ -11,6 +11,15 @@
         "This notebook joins the ECR datastore (`ecr`) and Person table from the Master Patient Index (`person`) on `person_id` to update the ECR datastore's `iris_id` with the most up-to-date `external_person_id` in the `person` table."
       ]
     },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {},
+      "outputs": [],
+      "source": [
+        "%pip install --upgrade pip"
+      ]
+    },
     {
       "cell_type": "code",
       "execution_count": null,

scripts/Synapse/updateECRDataStorePersonID.ipynb

@@ -11,6 +11,15 @@
         "This notebook joins the ECR datastore (`ecr`) and Patient table from the Master Patient Index (`patient`) on `patient_id` to update the ECR datastore's `person_id` with the most up-to-date `person_id` in the `patient` table. "
       ]
     },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {},
+      "outputs": [],
+      "source": [
+        "%pip install --upgrade pip"
+      ]
+    },
     {
       "cell_type": "code",
       "execution_count": null,

scripts/Synapse/updateMII.ipynb

@@ -10,6 +10,15 @@
         "This notebook inserts and updates data from an uploaded parquet file (`mii_incoming_file_path`) into a Master Incident Index (MII) delta table (`mii_delta_table_path`). "
       ]
     },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {},
+      "outputs": [],
+      "source": [
+        "%pip install --upgrade pip"
+      ]
+    },
     {
       "cell_type": "code",
       "execution_count": null,

terraform/modules/shared/main.tf

@@ -279,7 +279,7 @@ locals {
     "record-linkage",
   ])
 
-  phdi_version = "v1.1.1"
+  phdi_version = "v1.1.2"
 }
 
 data "docker_registry_image" "ghcr_data" {