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353 Open 477 Closed
353 Open 477 Closed
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Issues list

ERROR: file [DRR016125_2.fastq.gz] does not appear to exist!
#963 opened Oct 1, 2024 by ElToronjas
The contents of the quant.genes.sf file and the quant.sf file are identical.
#962 opened Sep 23, 2024 by happypiggyzjx
Salmon quant with --recoverOrphans fails without warning
#961 opened Sep 16, 2024 by Ecas9
How to use --read-geometry when specifying start and end of the both cDNA read pairs?
#960 opened Sep 11, 2024 by pchaturvedi-takara
Suggestions on --recoverOrphans
#959 opened Sep 11, 2024 by LinearParadox
Best practice specifying library type for 10X data
#958 opened Sep 9, 2024 by TereLaguinge
ERROR: Version Server Response: Not Found; missing symbol called
#957 opened Sep 6, 2024 by abhay030592
How to use metagenomic MAGs to align metatranscriptomic reads to obtain TPMs.
#956 opened Sep 4, 2024 by zx1474
Salmon 1.10.3 build failure
#953 opened Aug 20, 2024 by davidecarlson
Question about unassigned reads when running in alignment mode
#952 opened Aug 14, 2024 by zxl124
1
Doubts about running salmon after using STAR
#951 opened Aug 8, 2024 by desmodus1984
Some error was reported by the same command
#950 opened Aug 5, 2024 by YIGUIz
Salmon alevin cannot work well with 10X 3' V4 data
#949 opened Aug 2, 2024 by Cellecta
Identical insert size and SD
#948 opened Jul 30, 2024 by jamespblloyd-uwa
Dealing with Polycistronic transcripts
#947 opened Jul 22, 2024 by AlvaroBernardino
1
Error about Transcript * appears in the reference but did not appear in the BAM
#946 opened Jul 18, 2024 by YIGUIz
How to read the order of the counts in the ambig_info.tsv
#944 opened Jul 9, 2024 by callumparr
Salmon alevin errors out when cell barcode length is > 31 base pairs
#943 opened Jul 8, 2024 by connersk
1
Error reading from the FASTA/Q stream. Minimum return code for left and right read was (-2).
#941 opened Jun 27, 2024 by Hanjiangna
salmon quantmerge Error
#940 opened Jun 19, 2024 by Quzelei
Salmon index issues
#939 opened Jun 17, 2024 by aboridetayo
Error: no valid ID found for GFF record
#937 opened Jun 11, 2024 by duanshumeng
Problem installing salmon
#936 opened Jun 9, 2024 by pwkooij
Indexing misses duplicates containing non-ATGC characters
#935 opened Jun 9, 2024 by evanlawrence16
soft masked decoy
#934 opened Jun 8, 2024 by gjones3339
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