fix: CNVkit container #236
ivadymdocker_build_publish_develop.yml
on: pull_request
Matrix: Build and publish
Annotations
33 errors and 1 warning
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Build and publish (cnvkit)
buildx failed with: ERROR: failed to solve: process "/bin/sh -c python -m pip install --upgrade --no-cache-dir pip && python -m venv ${VENV} && pip install --no-cache-dir cnvkit==0.9.11" did not complete successfully: exit code: 1
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Build and publish (msisensorpro)
The job was canceled because "cnvkit" failed.
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Build and publish (msisensorpro)
The operation was canceled.
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Build and publish (ascatNgs)
The job was canceled because "cnvkit" failed.
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Build and publish (ascatNgs)
The operation was canceled.
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Build and publish (delly)
The job was canceled because "cnvkit" failed.
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Build and publish (delly)
The operation was canceled.
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Build and publish (somalier)
The job was canceled because "cnvkit" failed.
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Build and publish (somalier)
The operation was canceled.
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Build and publish (multiqc)
The job was canceled because "cnvkit" failed.
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Build and publish (multiqc)
The operation was canceled.
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Build and publish (cadd)
The job was canceled because "cnvkit" failed.
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Build and publish (cadd)
The operation was canceled.
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Build and publish (varcall_py27)
The job was canceled because "cnvkit" failed.
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Build and publish (varcall_py27)
The operation was canceled.
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Build and publish (annotate)
The job was canceled because "cnvkit" failed.
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Build and publish (annotate)
The operation was canceled.
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Build and publish (coverage_qc)
The job was canceled because "cnvkit" failed.
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Build and publish (coverage_qc)
The operation was canceled.
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Build and publish (align_qc)
The job was canceled because "cnvkit" failed.
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Build and publish (align_qc)
The operation was canceled.
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Build and publish (gatk)
The job was canceled because "cnvkit" failed.
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Build and publish (gatk)
The operation was canceled.
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Build and publish (cnvpytor)
The job was canceled because "cnvkit" failed.
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Build and publish (cnvpytor)
The operation was canceled.
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Build and publish (varcall_py3)
The job was canceled because "cnvkit" failed.
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Build and publish (varcall_py3)
The operation was canceled.
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Build and publish (htslib)
The job was canceled because "cnvkit" failed.
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Build and publish (htslib)
The operation was canceled.
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Build and publish (vcf2cytosure)
The job was canceled because "cnvkit" failed.
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Build and publish (vcf2cytosure)
The operation was canceled.
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Build and publish (purecn)
The job was canceled because "cnvkit" failed.
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Build and publish (purecn)
The operation was canceled.
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Build and publish (cnvkit)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, docker/setup-qemu-action@v2, docker/setup-buildx-action@v2, docker/login-action@v2, docker/build-push-action@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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