Update tax_predict.py script for later version of vConTACT2

GenomicsAotearoa · Aug 25, 2024 · 366a050 · 366a050
1 parent 5eaaf71
commit 366a050
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/docs/resources/4_APPENDIX_ex11_viral_taxonomy_prediction_via_vContact2.md b/docs/resources/4_APPENDIX_ex11_viral_taxonomy_prediction_via_vContact2.md
@@ -128,7 +128,11 @@ The following `python` script is effectively an automated version of this for al
 
     The taxonomies are deliberately enclosed in square brackets (`[ ]`) to highlight the fact that these are **predictions**, rather than definitive taxonomy **assignments**.
 
-For future reference, a copy of this script is available for download [here](../scripts/vcontact2_tax_predict.py)
+For future reference, a copy of this script is available for download [here](../scripts/tax_predict_vConTACT2_0.9.19.py)
+
+!!! note "Note"
+
+    This script was written for vConTACT2_0.9.19 and vConTACT2_0.11.3, and has not been tested with later versions. A comparable script for earlier versions of vConTACT2 is available [here](../scripts/vcontact2_tax_predict.py).
 
 !!! terminal "code"
 
@@ -138,7 +142,7 @@ For future reference, a copy of this script is available for download [here](../
 
     cd /nesi/nobackup/nesi02659/MGSS_U/<YOUR FOLDER>/7.viruses/
 
-    ./vcontact2_tax_predict.py \
+    ./tax_predict_vConTACT2_0.9.19.py \
     -i viral_taxonomy/vConTACT2_Results/genome_by_genome_overview.csv \
     -o viral_taxonomy/
     ```