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@PDB-REDO

PDB-REDO

Tools for macromolecular structure optimisation and analysis

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  1. dssp dssp Public

    Application to assign secondary structure to proteins

    C++ 174 19

  2. alphafill alphafill Public

    AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the mod…

    C++ 93 19

  3. libcifpp libcifpp Public

    Library containing code to manipulate mmCIF and PDB files

    C++ 30 10

  4. density-fitness density-fitness Public

    Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures

    C++ 5

  5. tortoize tortoize Public

    Application to calculate ramachandran z-scores

    C++

  6. platonyzer platonyzer Public

    CMake

Repositories

Showing 10 of 16 repositories
  • pdb-redo-archive-manager Public

    An daemon that provides access to archived PDB-REDO entries

    PDB-REDO/pdb-redo-archive-manager’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Dec 19, 2024
  • pdb-redo-session-manager Public

    A session manager for PDB-REDO

    PDB-REDO/pdb-redo-session-manager’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Dec 17, 2024
  • libpdb-redo Public

    Library containing shared code for various PDB-REDO programs

    PDB-REDO/libpdb-redo’s past year of commit activity
    C++ 0 BSD-2-Clause 0 0 0 Updated Dec 17, 2024
  • libcifpp Public

    Library containing code to manipulate mmCIF and PDB files

    PDB-REDO/libcifpp’s past year of commit activity
    C++ 30 BSD-2-Clause 10 1 2 Updated Dec 16, 2024
  • AlphaBridge Public
    PDB-REDO/AlphaBridge’s past year of commit activity
    Python 30 3 3 0 Updated Dec 10, 2024
  • alphafill Public

    AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.

    PDB-REDO/alphafill’s past year of commit activity
    C++ 93 BSD-2-Clause 19 0 0 Updated Nov 19, 2024
  • dssp-server Public

    Web server implementation for DSSP

    PDB-REDO/dssp-server’s past year of commit activity
    C++ 1 0 0 0 Updated Nov 6, 2024
  • density-fitness Public

    Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures

    PDB-REDO/density-fitness’s past year of commit activity
    C++ 5 BSD-2-Clause 0 0 0 Updated Oct 26, 2024
  • pdb-redo-main Public

    core pdb-redo script, tools and data files

    PDB-REDO/pdb-redo-main’s past year of commit activity
    Shell 0 BSD-2-Clause 0 0 0 Updated Oct 24, 2024
  • dssp Public

    Application to assign secondary structure to proteins

    PDB-REDO/dssp’s past year of commit activity
    C++ 174 BSD-2-Clause 19 2 0 Updated Oct 16, 2024
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