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    16 repositories

    • pdb-redo-archive-manager

      Public
      An daemon that provides access to archived PDB-REDO entries
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • pdb-redo-session-manager

      Public
      A session manager for PDB-REDO
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • libpdb-redo

      Public
      Library containing shared code for various PDB-REDO programs
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • libcifpp

      Public
      Library containing code to manipulate mmCIF and PDB files
      protein-structuremmcifpdb-files
      C++
      •
      BSD 2-Clause "Simplified" License
      •10•30•1•2•Updated Dec 16, 2024Dec 16, 2024

    • AlphaBridge

      Public
      Python
      •
      Other
      •3•30•3•0•Updated Dec 10, 2024Dec 10, 2024

    • alphafill

      Public
      AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
      C++
      •
      BSD 2-Clause "Simplified" License
      •19•93•0•0•Updated Nov 19, 2024Nov 19, 2024

    • dssp-server

      Public
      Web server implementation for DSSP
      C++
      •0•1•0•0•Updated Nov 6, 2024Nov 6, 2024

    • density-fitness

      Public
      Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•5•0•0•Updated Oct 26, 2024Oct 26, 2024

    • pdb-redo-main

      Public
      core pdb-redo script, tools and data files
      Shell
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • dssp

      Public
      Application to assign secondary structure to proteins
      proteinspdbdssp
      C++
      •
      BSD 2-Clause "Simplified" License
      •19•174•2•0•Updated Oct 16, 2024Oct 16, 2024

    • tortoize

      Public
      Application to calculate ramachandran z-scores
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • cif-tools

      Public
      A suite of programs to manipulate and examine mmCIF files
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•3•0•0•Updated Apr 8, 2024Apr 8, 2024

    • platonyzer

      Public
      CMake
      •
      BSD 2-Clause "Simplified" License
      •0•0•1•0•Updated Apr 8, 2024Apr 8, 2024

    • pdb-redo-builder

      Public
      Docker files to create an image you can use to build pdb-redo executables that run on older OS's like CentOS
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • privateer

      Public
      The Swiss Army knife for carbohydrate structure validation, refinement and analysis
      C++
      •
      GNU Lesser General Public License v2.1
      •9•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • 3d-beacons-registry

      Public
      Python
      •
      Apache License 2.0
      •9•0•0•0•Updated Jul 23, 2022Jul 23, 2022