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Biodomains semicolon update #124

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Biodomains semicolon update #124

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303786e
Modified genes_biodomains transform to handle semicolon-separated Ens…
jaclynbeck-sage Feb 17, 2024
ca08eff
Moved split_ensembl_ids function from biodomains transform to utils f…
jaclynbeck-sage Feb 21, 2024
04014dd
Updated gene annotation pre-processing to handle new biodomains file,…
jaclynbeck-sage Feb 21, 2024
699defe
Moved biodomain split operation before grouping operation in gene_inf…
jaclynbeck-sage Feb 21, 2024
4d5baef
Added clarification to the docstring for the new util function
jaclynbeck-sage Feb 21, 2024
2327fbc
Added test for null values for the split delimited function
jaclynbeck-sage Feb 21, 2024
e6c30d4
Changed resource url variables to uppercase to indicate constants
jaclynbeck-sage Feb 21, 2024
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8 changes: 4 additions & 4 deletions config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,10 +4,10 @@ sources:
- genes_biodomains:
genes_biodomains_files: &genes_biodomains_files
- name: genes_biodomains
id: syn44151254.1
id: syn44151254.4
format: csv
genes_biodomains_provenance: &genes_biodomains_provenance
- syn44151254.1
- syn44151254.4
- overall_scores:
overall_scores_files: &overall_scores_files
- name: overall_scores
Expand Down Expand Up @@ -135,7 +135,7 @@ datasets:
- gene_info:
files:
- name: gene_metadata
id: syn25953363.10
id: syn25953363.11
format: feather
- name: igap
id: syn12514826.5
Expand Down Expand Up @@ -178,7 +178,7 @@ datasets:
possible_replacement: ensembl_possible_replacements
permalink: ensembl_permalink
provenance:
- syn25953363.10
- syn25953363.11
- syn12514826.5
- syn12514912.3
- *agora_proteomics_provenance
Expand Down
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