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Use samtools mpileup -a option in consensus pipeline #144

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@wm75 wm75 commented Feb 6, 2023

Without this, ivar consensus drops zero-coverage positions independent of the -k flag.

Without this, ivar consensus drops zero-coverage positions independent of the -k flag.
@cmaceves cmaceves self-assigned this Feb 6, 2023
@gkarthik gkarthik added this to the v1.3.3 milestone Feb 20, 2023
@cmaceves cmaceves removed this from the v1.3.3 milestone Feb 23, 2023
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