CpG_Me v1.4.1

Minor updates and trigger for Zenodo

CpG_Me v1.4

• Lane merging and general documentation updates
• Genome preparation scripts now download from UCSC genome browser
• General tidying of scripts

CpG_Me v1.3

New features:

1. Added Insert Size Metrics to paired-end pipeline for GEO compliance, which was done in collaboration with @cemordaunt

Optimizations:

1. Added parallel processing for newest trim_galore version
2. Increased speed for final html multiQC report by tidying SLURM logs first
3. Improved job dependencies and further resource optimizations
4. Removed Bismark_to_Permeth_DSS.py by @hyeyeon-hwang since legacy file formats are no longer needed as DMRichR has entirely replaced legacy programs
5. Updated version of multiQC to remove paired-end display glitch

There have also been some documentation updates.

CpG_Me v1.2

CpG_Me now supports data from the NovaSeq, which is set as the default option. There has also been a number of documentation updates and tidying of the scripts.

CpG_Me v1.1

Version 1.1

CpG_Me v1.0

Version 1.0