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CpG_Me v1.3

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@ben-laufer ben-laufer released this 03 Feb 23:07
· 38 commits to master since this release

New features:

  1. Added Insert Size Metrics to paired-end pipeline for GEO compliance, which was done in collaboration with @cemordaunt

Optimizations:

  1. Added parallel processing for newest trim_galore version
  2. Increased speed for final html multiQC report by tidying SLURM logs first
  3. Improved job dependencies and further resource optimizations
  4. Removed Bismark_to_Permeth_DSS.py by @hyeyeon-hwang since legacy file formats are no longer needed as DMRichR has entirely replaced legacy programs
  5. Updated version of multiQC to remove paired-end display glitch

There have also been some documentation updates.