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Adding initial versions of Sourmash Dockerfiles #145

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Dec 10, 2024
Merged

Adding initial versions of Sourmash Dockerfiles #145

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29 changes: 29 additions & 0 deletions sourmash/Dockerfile_4.8.2
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# Using the miniforge base image
FROM condaforge/miniforge3:24.7.1-2

# Adding labels for the GitHub Container Registry
LABEL org.opencontainers.image.title="sourmash" \
org.opencontainers.image.description="Container image for the use of Sourmash in FH DaSL's WILDS" \
org.opencontainers.image.version="4.8.2" \
org.opencontainers.image.authors="wilds@fredhutch.org" \
org.opencontainers.image.url="https://hutchdatascience.org/" \
org.opencontainers.image.documentation="https://getwilds.org/" \
org.opencontainers.image.source="https://github.com/getwilds/wilds-docker-library" \
org.opencontainers.image.licenses="MIT"

# Configure conda to run in non-interactive mode
ENV CONDA_ALWAYS_YES=true

# Create the conda environment and install sourmash with specific version
SHELL ["/bin/bash", "-c"]
RUN /opt/conda/bin/conda create -n sourmash_env -c conda-forge sourmash-minimal=4.8.2 && \
echo "source /opt/conda/bin/activate sourmash_env" >> ~/.bashrc

# Set default command to activate conda environment
SHELL ["/bin/bash", "-c"]

# Verify installation and version
RUN /opt/conda/bin/conda run -n sourmash_env sourmash --version

# Set the default command to run bash with the conda environment activated
ENTRYPOINT ["/bin/bash", "-c", "source /opt/conda/bin/activate sourmash_env && exec /bin/bash"]
29 changes: 29 additions & 0 deletions sourmash/Dockerfile_latest
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# Using the miniforge base image
FROM condaforge/miniforge3:24.7.1-2

# Adding labels for the GitHub Container Registry
LABEL org.opencontainers.image.title="sourmash" \
org.opencontainers.image.description="Container image for the use of Sourmash in FH DaSL's WILDS" \
org.opencontainers.image.version="latest" \
org.opencontainers.image.authors="wilds@fredhutch.org" \
org.opencontainers.image.url="https://hutchdatascience.org/" \
org.opencontainers.image.documentation="https://getwilds.org/" \
org.opencontainers.image.source="https://github.com/getwilds/wilds-docker-library" \
org.opencontainers.image.licenses="MIT"

# Configure conda to run in non-interactive mode
ENV CONDA_ALWAYS_YES=true

# Create the conda environment and install sourmash with specific version
SHELL ["/bin/bash", "-c"]
RUN /opt/conda/bin/conda create -n sourmash_env -c conda-forge sourmash-minimal=4.8.2 && \
echo "source /opt/conda/bin/activate sourmash_env" >> ~/.bashrc

# Set default command to activate conda environment
SHELL ["/bin/bash", "-c"]

# Verify installation and version
RUN /opt/conda/bin/conda run -n sourmash_env sourmash --version

# Set the default command to run bash with the conda environment activated
ENTRYPOINT ["/bin/bash", "-c", "source /opt/conda/bin/activate sourmash_env && exec /bin/bash"]
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