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Encodings #255
Commits on Jun 16, 2023
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- use chunks and dask delayed to keep memory usage efficient - get_geotop now gets raw data - add deprecationwarning to get_geotop_raw_within_extent()
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old get_geotop is renamed geotop_to_layermodel:
- now takes geotop_ds as input to convert to layers (not extent)
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- do not use sortby but check diff of y dimension and flip if necessary
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Commits on Jun 20, 2023
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- use .values instead of .data to load data into memory if using dask - undo onno changes for now w missing strat code
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Commits on Jun 21, 2023
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Use dask delayed to read model output
- add kwarg delayed, if False, load data into memory, else return data array with delayed dask arrays - add kwarg chunked, if True, chunk data array with chunks="auto" - add x,y data to vertex grid data array
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- add function name in all cases - add line number when level is DEBUG
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fix geotop_lithok_in_cross_section
- use .values to deal with dask arrays - use get_geotop - update docstring
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Commits on Jun 23, 2023
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Rename geotop_to_layermodel to to_model_layers and remove convert_geo…
…top_to_ml_layers
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Commits on Jun 26, 2023
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Commits on Jul 3, 2023
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Commits on Jul 4, 2023
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Commits on Jul 7, 2023
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199 nlmodgwfic slow for uniform starting head (#200)
* fix for #199 * fix * return da in some situations --------- Co-authored-by: Ruben Caljé <r.calje@artesia-water.nl>
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Commits on Jul 10, 2023
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Small fix for Error: Assigning CRS to a GeoDataFrame without a geometry column is not supported
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add fontsize to plot_layers in DatasetCrossSection
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Commits on Jul 12, 2023
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198 deal with outdated cache pickles (#201)
* fix for #198 * codacy fix --------- Co-authored-by: Ruben Caljé <r.calje@artesia-water.nl>
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181 further improve caching by checking only relevant coordinates for…
… certain datasets (#202) * add option in get_ds_empty to specify dimensions * fix error for vertex grids --------- Co-authored-by: Ruben Caljé <r.calje@artesia-water.nl>
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Commits on Jul 17, 2023
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- fix where command for dry/noflow - improve support for loading output without gwf or ds
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Merge pull request #195 from ArtesiaWater/logging-and-docstrings
Improve logging and docstrings
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Commits on Jul 19, 2023
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- new folder mfoutput - add new flopy binary read functions that support multithreading (binaryfile.py) - separate reading budget and head output - modify gwf.output and gwt.output to use new methods - split logic into multiple reusable functions - add support for grb files - add/improve tests - add method to obtain dims, coords from modelgrid object
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Commits on Jul 20, 2023
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- codacy - fix comments @OnnoEbbens - some additional fixes
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- replace Exception with more specific types - add LayerError and MissingValueError - fix some typos
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Merge pull request #196 from ArtesiaWater/193-geotop
Improve geotop functionality
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Merge pull request #194 from ArtesiaWater/mfoutput
Improve reading model output
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Commits on Jul 27, 2023
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deal with time dimension for steady state models for EVT pkg
- if steady state select first timestep from evaporation data - squeeze evaporation data when building stress_period_data
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Commits on Jul 28, 2023
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- do not nearest extrpolate if no nans in data - do not raise exception, just log warning
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Commits on Jul 31, 2023
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Commits on Aug 7, 2023
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Commits on Aug 10, 2023
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Commits on Aug 15, 2023
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Commits on Aug 16, 2023
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Add layer argument to nlmod.gwf.chd and nlmod.gwf.ghb (just like nlmo…
…d.gwf.drn, but then with a default value of 0 for chd) The defaults remain the same (although questionable), so this will not alter existing scripts
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Commits on Aug 22, 2023
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Commits on Aug 23, 2023
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Make sure ssm_sources is a list (which is not the case when ds is loa…
…ded from a file)
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Commits on Aug 24, 2023
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Merge pull request #230 from ArtesiaWater/improve-plots
add contour-array flopy func
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Merge pull request #231 from ArtesiaWater/zeeland
Updates based on model in Zeeland
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Merge branch 'dev' into 227-write-dataset-to-model-workspace-instead-…
…of-cachedir-in-write_and_run_model
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fix Projection issue in backgroundmaps #240
- add custom crs definition string
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improve plotting in notebooks #224
- use nlmod.plot.get_map() where possible - simplify plotting with nlmod.plot.map_array() - other nb improvements (e.g. descriptions, text, etc). - rename kwarg background to backgroundmap in get_map - improve default axis ticks in get_map - some typos - rename layer coord to source_layer in get_concentration_at_gw_surface()
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Merge pull request #236 from ArtesiaWater/227-write-dataset-to-model-…
…workspace-instead-of-cachedir-in-write_and_run_model 227 write dataset to model workspace instead of cachedir in write and run model
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Merge pull request #239 from ArtesiaWater/210-nlmod-adding-rch-and-ev…
…t-packages 210 nlmod adding rch and evt packages
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Merge pull request #242 from ArtesiaWater/calculate_sea
Add calculate_sea_coverage
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Commits on Aug 25, 2023
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Merge pull request #238 from ArtesiaWater/218-getting-an-extra-layer-…
…when-reading-geotop-from-cache 218 getting an extra layer when reading geotop from cache
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Merge pull request #246 from ArtesiaWater/label_layers
Add DatasetCrossSection.label_layers
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Merge pull request #244 from ArtesiaWater/plotting-in-notebooks
improve plotting in notebooks #224
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Merge pull request #241 from ArtesiaWater/epsg-28992-issue
fix Projection issue in backgroundmaps #240
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Merge pull request #243 from ArtesiaWater/stop_overwriting_kh_and_kv_…
…geotop Stop overwriting kh and kv of geotop in add_geotop_to_regis_layers
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Merge pull request #248 from ArtesiaWater/codacy
codacy suggestions
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Merge pull request #247 from ArtesiaWater/add_caching_data_array
Add caching for DataArrays as well
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Merge pull request #249 from ArtesiaWater/97-drn-riv-ghb-packages-in-…
…nlmodgwf improve gwf bc pkgs
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Merge pull request #250 from ArtesiaWater/calculate_idomain_on_the_fly
Remove idomain from Dataset
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* Small doc changes to gwt/output.py * Create attributes_encodings.py * Removed unused imports * Extended get_encodings * Added test to encoding * Minor indentation bug in get_encodings() * Better error message in attributes encoding
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Commits on Aug 28, 2023
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