v8.1.1

What's Changed

• Deprecated emsl_proect_dois and removed from Study class usage by @brynnz22 in #1161
• Require study_category by @brynnz22 in #1162
• remove publications slot, update example data by @brynnz22 in #1136
• prep for migration action: workflow_dispatch by @turbomam in #1176
• prep for migration action: deploy java by @turbomam in #1177
• prep for migration action: get java version by @turbomam in #1178
• download robot by @turbomam in #1179
• prep for migration action: download robot shell script by @turbomam in #1180
• prep for migration action: get robot version by @turbomam in #1181
• prep for migration action: simplify action by @turbomam in #1182
• prep for migration action: robot test convert by @turbomam in #1183
• prep for migration action: add jena by @turbomam in #1184
• prep for migration action: load tdb by @turbomam in #1185
• prep for migration action: query tdb by @turbomam in #1186
• prep for migration action: build before loading or querying by @turbomam in #1187
• prep for migration action: poetry setup before build by @turbomam in #1188
• prep for migration action: query schema and data by @turbomam in #1189
• prep for migration action: blank local/.env ok? by @turbomam in #1190
• Add backticks around file path to format it as code by @eecavanna in #1202
• Extract transformation functions into migration-specific classes by @eecavanna in #1155
• sparql extraction of Gs0114663 and Biosamples by @turbomam in #1206
• id mentions pattern checking including updated example data by @turbomam in #1209
• differentiate cookiecutter-help from help by @turbomam in #1210
• Acknowledge two makefiles in README by @turbomam in #1213
• restored make-rdf stuff and now supporting nmdc:sty-11-hdd4bf83 by @turbomam in #1225
• Finalize name of class that migrates data from 8.0.0 to 8.1.0 by @eecavanna in #1227
• validation of OmicsProcessing outputs by @turbomam in #1218
• Update nmdc-schema-style-and-collaboration-guide.md by @turbomam in #1203
• nmdc-schema style and collaboration guidelines by @turbomam in #1201
• don't check OmicsProcessing has_input id pattern on legacy data by @turbomam in #1231
• Bump urllib3 from 2.0.5 to 2.0.7 by @dependabot in #1232
• polymorphic planned process by @turbomam in #1238
• first steps in migration notes by @turbomam in #1061
• removing old, inflexible doi reporting by @turbomam in #1240
• notebook for reporting classes that can't be aggregated in a Database instance by @turbomam in #1106
• Merge in SubSamplingProcess and supporting changes by @turbomam in #1199

New Contributors

• @dependabot made their first contribution in #1232

Full Changelog: v8.1.0...v8.1.1