CI: Add new pathogens to pathogen-repo-ci

[joverlee521]

Description of proposed changes

Part of #1703

Checklist

• Automated checks pass
• Check if you need to add a changelog message
• Check if you need to add tests
• Check if you need to update docs

[joverlee521]

CI still completed in ~20m so no changes to overall CI run time with the additional pathogens.

In case this was masked by the long Python 3.12 run time, I also looked at per pathogen run times:

pathogen	run time
oropouche	1m 32s
rabies	2m 22s
wnv	1m 10s
yellow-fever	4m 14s