logout: Add --all flag remove all locally-saved credentials

It's handy and reassuring to be able to clear all login credentials
without remembering what remotes you're logged into.

doc/commands/logout.rst

@@ -12,7 +12,9 @@ nextstrain logout
 
 .. code-block:: none
 
-    usage: nextstrain logout [-h] [<remote-url>]
+    usage: nextstrain logout [<remote-url>]
+           nextstrain logout --all
+           nextstrain logout --help
 
 
 Log out of Nextstrain.org (and other remotes) by deleting locally-saved
@@ -45,3 +47,7 @@ options
 
     show this help message and exit
 
+.. option:: --all
+
+    Log out of all remotes for which there are locally-saved credentials
+

nextstrain/cli/authn/__init__.py

@@ -145,6 +145,29 @@ def logout(origin: Origin):
         print(f"Not logged in to {origin}.", file = stderr)
 
 
+def logout_all():
+    """
+    Remove **all** locally-saved credentials.
+
+    Equivalent to calling :func:`logout` on all origins found in the secrets
+    file.
+    """
+    with config.write_lock():
+        secrets = config.load(config.SECRETS)
+
+        sections = [
+            (section, _parse_section(section))
+                for section in secrets
+                 if _parse_section(section) ]
+
+        for section, origin in sections:
+            del secrets[section]
+            print(f"Credentials for {origin} removed from {config.SECRETS}.", file = stderr)
+            print(f"Logged out of {origin}.", file = stderr)
+
+        config.save(secrets, config.SECRETS)
+
+
 def current_user(origin: Origin) -> Optional[User]:
     """
     Information about the currently logged in user for *origin*, if any.
@@ -237,3 +260,12 @@ def _config_section(origin: Origin) -> str:
     if origin == "https://nextstrain.org":
         return CONFIG_SECTION
     return f"{CONFIG_SECTION} {origin}"
+
+
+def _parse_section(section: str) -> Optional[Origin]:
+    if section == CONFIG_SECTION:
+        return Origin("https://nextstrain.org")
+    elif section.startswith(CONFIG_SECTION + " "):
+        return Origin(section.split(" ", 1)[1])
+    else:
+        return None

nextstrain/cli/command/logout.py

@@ -9,10 +9,16 @@
 Nextstrain.org (or other remotes).
 """
 from inspect import cleandoc
+from .. import authn
 from ..remote import parse_remote_path
 
 
 def register_parser(subparser):
+    """
+    %(prog)s [<remote-url>]
+    %(prog)s --all
+    %(prog)s --help
+    """
     parser = subparser.add_parser("logout", help = "Log out of Nextstrain.org (and other remotes)")
 
     parser.add_argument(
@@ -27,14 +33,20 @@ def register_parser(subparser):
         nargs   = "?",
         default = "nextstrain.org")
 
-    # XXX TODO: Supporting `nextstrain logout --all` would be nice.
-    #   -trs, 15 Nov 2023
+    parser.add_argument(
+        "--all",
+        help = "Log out of all remotes for which there are locally-saved credentials",
+        action = "store_true")
 
     return parser
 
 
 def run(opts):
-    remote, url = parse_remote_path(opts.remote)
-    assert url.origin
+    if opts.all:
+        authn.logout_all()
+
+    else:
+        remote, url = parse_remote_path(opts.remote)
+        assert url.origin
 
-    remote.logout(url.origin)
+        remote.logout(url.origin)