Bump actions/configure-pages from 4 to 5 #437
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| test-cram: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| # Login shell is required to include changes by conda init bash. | |
| shell: bash -l -eo pipefail {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: "3.9" | |
| miniforge-variant: Mambaforge | |
| channels: conda-forge,bioconda | |
| - name: Install Cram | |
| run: python3 -m pip install cram | |
| - name: Install pandas and tsv-utils | |
| run: mamba install "pandas>=1.0.0,<2.2.0" "tsv-utils" "pango_aliasor>=0.3.0" | |
| - name: Run Cram tests | |
| run: cram --shell=/bin/bash tests/ |