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Issues list

Allow discontinuing replicate numbers enhancement New feature or request
#397 opened Dec 19, 2024 by aghr
Latest version still generated MACS2, not MACS3 bug Something isn't working
#389 opened Nov 2, 2024 by liuyang2006
Scale bar inconsistency across samples enhancement New feature or request
#388 opened Oct 31, 2024 by hyjforesight
Set chromap to not shift reads by default enhancement New feature or request
#381 opened Sep 27, 2024 by JoseEspinosa 2.2
ATAC-seq Spike-in control enhancement New feature or request
#380 opened Sep 23, 2024 by whw006
Picard "--TMP_DIR" arguments are hardcoded bug Something isn't working
#378 opened Aug 16, 2024 by vondoRishi
New release please? enhancement New feature or request
#373 opened Jul 4, 2024 by siddharthab
deprecated container formats bug Something isn't working
#361 opened Apr 8, 2024 by LinearParadox
Feature Request: summary table for each sample enhancement New feature or request
#345 opened Jan 26, 2024 by lindenb
bam_csi_index parameter for ATACSeq enhancement New feature or request
#343 opened Dec 20, 2023 by BianyunY-ACRD
Process terminated for an unknown reason (SLURM) bug Something isn't working
#339 opened Oct 16, 2023 by hdbeukel
the sample field from the samplesheet is too lenient bug Something isn't working WIP Work in progress
#338 opened Oct 9, 2023 by maxulysse
MAKE_GENE_BED making 0kb .bed files
#334 opened Sep 6, 2023 by hcliedtke
CSI bam index not working bug Something isn't working
#327 opened Aug 10, 2023 by heathfuqua
Add GRCm39 option to config enhancement New feature or request
#273 opened May 2, 2023 by laurenhsu1
Biotype analysis using featureCounts enhancement New feature or request
#188 opened Aug 11, 2022 by chuan-wang
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